BED Format and BEDtools a Practical Tutorial

#bioinformatics #bedtools #biology #genetics
Here's what you will learn.
00:00 Intro
00:05 BED format
03:00 0 Base vs 1 Base Positions
05:40 Coordinate Systems for Common Files
06:55 Convert VCF to BED with awk
09:42 Sorting BED files
11:17 bgzip and tabix BED files
12:33 Split BED by chromosomes with awk
15:45 Bedtools Intersect
18:10 Filter variants with Bedtools
25:29 Make BED file of exons (GTF to BED)
29:13 Add/Remove 'chr' from BED file
31:57 Intersect variants to exons
34:44 Get unique gene names from exon intersect
38:06 Upload BED file to UCSC Genome Browser
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GitHub: github.com/dantaki/videos/blo...
Bedtools: bedtools.readthedocs.io/en/la...

[@Sri_Harsha_Electronics_Guthik]

i dont think i have learnt so much info from one video in a long time! tq!

[@javierfernandezfavieres2816]

Thank you, it helped me with my problems creating bed files

[@StRb296]

Very clear and helpful! Thanks a lot!

[@jbrake30]

SUPER helpful! Thanks!

[@adimascahyaning9202]

This is great tutorial on bedtools!
I am not sure, how do we get that nice column?

[@adimascahyaning9202]

solved! using less -S :D

[@escastorage7427]

can you make a tutorial about ATAC seq downstream analysis ?

[@AaryaM-lx8yd]

Can you make a tutorial for bigbed to bed format?

[@amrsalaheldin3814]

how can i convert bedgraph file to bigwig please