Extracting transcripts from a GTF file and genome FASTA file using basic python
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- Опубліковано 19 лис 2021
- In this video, I will show how to extract transcript sequences using a GTF file of transcript annotations and the genomic FASTA file. I will use a dictionary of lists of tuples to store the exon coordinates, and then extract substrings for each exon, and concatenate them, taking into account the gene strand.
You may want to see my previous videos that could be relevant here:
• Reading Large Genome-S...
• Reading tab-delimited ...
Thanks Prof… even tho this isn’t what I’m looking for. I learnt a lot from this video
Exactly what I was looking for. Thanks professor!!!