Designing gRNA Oligos to Clone into Cas9 Expression Plasmids for KO Experiments

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  • Опубліковано 28 сер 2019
  • Description of the steps required to design effective gRNA sequences and then clone those sequences into a Cas9 expression plasmid for KO experiments.
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КОМЕНТАРІ • 143

  • @mohammadalmijan1947
    @mohammadalmijan1947 18 годин тому

    I can’t believe someone can explain this so simply while being detailed! Thanks Elmer! 👍

  • @marazilocchi1721
    @marazilocchi1721 2 роки тому +45

    I read 200 papers to understand CRISPR knockout and it was almost impossible. This is the best explanation ever. Simple and efficient. Thanks!

  • @jigglypuff6297
    @jigglypuff6297 2 роки тому +16

    I am usually skeptical of long videos, but this one explained everything I needed to know well and did not waste a single second. Thanks!

  • @plantbiotech1701
    @plantbiotech1701 3 місяці тому +2

    such a great videos i read so many papers but nobody explained this clearly

  • @mandarin9967
    @mandarin9967 Рік тому +1

    Thank you soooo much! This video is extremely helpful. Should mention that you have a nice voice and pronunciation, it's so important for a non-native speaker:)

  • @ahsenkonac7992
    @ahsenkonac7992 4 роки тому +11

    this video much more informative and clear than classical procedures, especially the chopchop part is very helpful. . Thanks a lot for sharing.

  • @uzoechisamuel
    @uzoechisamuel 2 роки тому

    I paid fees to people that confused me. In less than 30mins you explained everything. Thanks so much.

  • @alicegevorgyan7046
    @alicegevorgyan7046 4 роки тому +2

    This was really helpful, thank you for making it!

  • @muskangupta4542
    @muskangupta4542 3 роки тому +12

    Probably the best video..... your efforts are really appreciated:-)

  • @roujehgashan1310
    @roujehgashan1310 4 роки тому +1

    Thank you so much for the simplicity and clarity of the instructions

  • @gabrielletodd3314
    @gabrielletodd3314 2 роки тому

    Thanks so much! This was incredibly helpful and I appreciate all of the useful tidbits!

  • @alexdesouza8351
    @alexdesouza8351 9 місяців тому

    The greatest explenation of CRISPR in UA-cam. Congratulations

  • @amirhosseinjafariyan9203
    @amirhosseinjafariyan9203 Рік тому

    This video was amazing, Jacob! thank you so much for sharing it!

  • @ttp2210
    @ttp2210 6 місяців тому

    Thank you so much. The way you explain by breaking everything down makes it so easy to understand. I hope you make more videos like this. Also, your way of articulation and slides are amazing and never bores me out.

  • @tramdang8924
    @tramdang8924 3 роки тому

    This is the best video I have found on this topic. Thank you.

  • @tammy1130HD
    @tammy1130HD Рік тому

    thank you for making this video in such clear and practical way!

  • @mariasimanovich4259
    @mariasimanovich4259 2 роки тому

    It's just the perfect explanation. Thank you!

  • @aman199kumar
    @aman199kumar 2 роки тому +2

    Very informative especially for the beginners. Thank you for making this video!

  • @aa-so4nj
    @aa-so4nj 2 роки тому

    Very informative lecture with details, thanks a lot!

  • @tifikocku
    @tifikocku 3 роки тому

    Dude, this is thy best CRISPR video on the net! tnx

  • @Forever1DFan100
    @Forever1DFan100 2 роки тому

    cant thank you enough for making this video!

  • @amiteshanand9073
    @amiteshanand9073 2 роки тому

    Great job, Jacob!

  • @mariamadelowo226
    @mariamadelowo226 4 роки тому

    Thanks for this very explicit video

  • @cacevedo07
    @cacevedo07 2 роки тому

    Best tutorial on this topic, I've ever watched. You have another subscriber here. Many thanks!

  • @yayayayapewpew
    @yayayayapewpew 5 місяців тому

    So beginner friendly and helpful. Thank you so much! ♥️

  • @shanidror4613
    @shanidror4613 3 роки тому

    Thank you so much! very useful and clear explanation!

  • @elliem0830
    @elliem0830 9 місяців тому

    OMG!!!! FINALLY, I GOT IT! This video is the best ever Jacob:) Thank you

  • @JasonLubega
    @JasonLubega 10 місяців тому

    Grateful for this video. It has been helpful. You are a good teacher.

  • @hibahi9008
    @hibahi9008 3 роки тому

    Extremely helpful! Thanks a lot

  • @ednilsonvarela1712
    @ednilsonvarela1712 Рік тому

    Congratulations Jacob Elmer, I really like it. Super didactic. Surely one of the best video.

  • @nishattamanna2372
    @nishattamanna2372 2 роки тому +1

    More than a Perfect Video!!

  • @salmaaktar7714
    @salmaaktar7714 3 роки тому

    thank u for simple but nice explanation, it helps me a lot

  • @varsharathore6457
    @varsharathore6457 3 роки тому

    Thank you so much, you really explained so clear🙏

  • @naeemakhter5666
    @naeemakhter5666 3 місяці тому

    Amazing video easy to understand and you have a really nice way of explaining ! Keep up the good work

  • @younusbhat8019
    @younusbhat8019 Рік тому

    Thanks a lot Jacob... .. . Even few of my Postdoc Colleagues were not able to make me understand it like the way you did... .. . Really appreciate it a lot

  • @hitkarshkushwaha2434
    @hitkarshkushwaha2434 3 роки тому

    I love your explanation..

  • @andreadellolio805
    @andreadellolio805 3 роки тому

    Thanks thanks thanks for the help! You're a legend!

  • @mirkhurshid8243
    @mirkhurshid8243 Рік тому

    i have never done CRISPER, after watching this great master lecture i am confident that I can do it very well in lab. very detailed practical steps.

  • @mfarooqsr5607
    @mfarooqsr5607 3 роки тому

    Sir, very well informative lecture for me I loved the way you explained.

  • @muhammadbilalsarwar5646
    @muhammadbilalsarwar5646 2 роки тому

    Thanks for the wonderful informative video :) .

  • @oberschnerpfel
    @oberschnerpfel 3 роки тому +1

    Great video man, my professor just isn't all there and no one in our course understood how to design a gRNA :/ With your Video I just get it now. Thanks for the clarity and especially the explanation how the algorithm works and how you could do it yourself. Such a great help thx again

  • @cristinacl3782
    @cristinacl3782 2 роки тому

    Perfect explanation thank you!

  • @anggunsausan6738
    @anggunsausan6738 3 роки тому

    Oh my God, you save my life. Thanks a lot!

  • @aurelie8287
    @aurelie8287 4 роки тому

    This is great! Thanks!

  • @waqasrafique6016
    @waqasrafique6016 2 роки тому

    Comprehensive details, the Best method of explanation. I am gonna subscribe and like your channel to support your generous efforts. Thanks btw for the time and effort you put into this video.

  • @ManiKitchenHealthy
    @ManiKitchenHealthy 5 місяців тому

    very good video. Easy to understand such a difficult approach.

  • @ARASHIop77
    @ARASHIop77 2 роки тому +1

    Thanks jacob. I loved how finely you explained everything. I was wondering if you make a video on crisprs mediated repair outcomes.

  • @cr9367
    @cr9367 4 роки тому

    Really nice tuto thanks !

  • @rohinibhattacharya2067
    @rohinibhattacharya2067 3 роки тому

    This video is amazing

  • @gsmaga2
    @gsmaga2 3 роки тому

    Thanks a lot for your explanation it helped a lot

  • @user-xr6sk2ch2q
    @user-xr6sk2ch2q 7 місяців тому

    Amazing explanation

  • @quackat1110
    @quackat1110 2 роки тому +1

    Utterly resourceful, definitely deserve more views and subscriptions!!
    Btw, chopchop is constantly in use, priority 6-9 is common..

  • @user-ie7fx9xn9q
    @user-ie7fx9xn9q 6 місяців тому

    Very informative video. Clear all doubts about gRNA design.

  • @user-lh8wc1bc6q
    @user-lh8wc1bc6q 2 роки тому

    awesome video!! thanks!!

  • @Omidvatan
    @Omidvatan 4 роки тому +3

    I have been looking for a good source for gRNA design for several weeks. Only with this video, I could find the answer to almost all of my questions. Thanks a lot, Jacob. Great job. Would you please add a quick video on how to design gRNA for CRISPR/dCas9 system for gene expression regulation? Thanks

  • @AnNguyen-dp7qd
    @AnNguyen-dp7qd 2 роки тому

    thanks a lot, it is extremely informative !

  • @moizkhan1501
    @moizkhan1501 10 місяців тому

    Thank you. Please make more videos on techniques used in the field of Biotechnology. The way you explain procedures and processes is very easy to understand and follow. You, sir, are amazing.

  • @9836862908
    @9836862908 3 роки тому

    This is outstanding

  • @yelizidilyigit5716
    @yelizidilyigit5716 3 роки тому

    thank you very much, it's very helpful!

  • @zahrabaghban6313
    @zahrabaghban6313 2 роки тому

    Very useful and instructive

  • @Exploretheexperiece
    @Exploretheexperiece 2 роки тому

    Very useful contents.thanks dear

  • @stuart999able
    @stuart999able Рік тому

    This was very helpful

  • @priyambiswas4902
    @priyambiswas4902 3 роки тому

    So nice presentation... Very informative & easily digestible material.. Much useful than other Videos.. Thanks a lot

  • @laowan4064
    @laowan4064 3 роки тому

    thanks for this tutorial.

  • @BestFoodAndTravelVideos
    @BestFoodAndTravelVideos 2 місяці тому

    SIMPLY PERFECT

  • @Farhab
    @Farhab Рік тому

    Awesome 🎉

  • @aymankhalifa5462
    @aymankhalifa5462 6 місяців тому

    Thank you!

  • @trynewthings321
    @trynewthings321 3 роки тому

    Awesome Video thanks alooooooooot

  • @mangarific1
    @mangarific1 2 роки тому

    Thankyou so much! Please keep making engineering videos

  • @masumasultana1236
    @masumasultana1236 3 роки тому

    great video indeed

  • @hitkarshkushwaha1727
    @hitkarshkushwaha1727 6 днів тому

    Very nice dear sir

  • @mihir86100
    @mihir86100 3 роки тому

    Really helpful. More video expected on CRISPR

  • @shaliperezmendez735
    @shaliperezmendez735 Рік тому

    Te amo, gracias me salvaste

  • @ruilan2238
    @ruilan2238 3 роки тому

    AMAZING THANK U SO MUCH

  • @vijaytejwani461
    @vijaytejwani461 3 роки тому

    Bravo!

  • @manikantakolasani8440
    @manikantakolasani8440 4 роки тому +1

    sir u are amazing
    I really loved the way u explained
    u made my job much easier
    plz make an video how do I clone a dna segment in to a vector in detail

  • @alvarolucci57
    @alvarolucci57 Рік тому

    Genius!

  • @sciencehabitat3969
    @sciencehabitat3969 3 роки тому

    My first word after watching this video was WoW. Not usual for me.

  • @DeepakKumar-fo4mg
    @DeepakKumar-fo4mg 4 роки тому

    Dear, Greetings, You are awesome

  • @enerandmackon761
    @enerandmackon761 2 роки тому +1

    the best video! thank you, please can you continue this video for the next step of CRISPR/cas9?

  • @celcorsystems1890
    @celcorsystems1890 Рік тому

    good work

  • @mimm4332
    @mimm4332 7 місяців тому

    much love

  • @anumjaved3702
    @anumjaved3702 2 роки тому

    Superb

  • @diptanilbiswas5657
    @diptanilbiswas5657 2 роки тому

    Lovely

  • @gorsarkisyan5614
    @gorsarkisyan5614 Рік тому

    Great video, thanks for taking the time to explain how it works, this is great help. I have one question, how should I proceed if I want to excise a potion of an intron and remove it completely? Thanks in advance.

  • @kiranpatil2924
    @kiranpatil2924 Рік тому

    Thank you,, Please make a video on Analysis of ON and OFF target from NGS seq.. Cheers

  • @ankitavaishampayan2239
    @ankitavaishampayan2239 2 роки тому

    Such a clear and informative video! I had a quick question. I am looking to knock out a gene cluster in bacteria. Would this procedure work in bacteria as well?
    Thank you very much 🙂

  • @zarak5055
    @zarak5055 Рік тому

    That was a great video. Thank you very much. How about if we want to Knock in a gene?!

  • @canergunaydin7145
    @canergunaydin7145 2 роки тому

    Informative! Can you also make a video about knock-in design ? Thanks.

  • @Daniel-wd7ie
    @Daniel-wd7ie 3 роки тому

    Hi Jacob, I am glad I found your video! It is really helpful. However, I still have one question: if you have these sticky ends between gRNA and scRNA, how do they assemble correctly?

  • @nahuelcesattilaluce1257
    @nahuelcesattilaluce1257 4 роки тому

    I found your video more than useful! Thanks a lot...and I have a question! there is a way to see in what exon is located targets sequences ? I mean, not manually checking every exon in the gene... If you work with a big gene, with lot of exons, it can be pretty annoying look for your target sequence just checking sequence along.

    • @Farhab
      @Farhab 10 місяців тому

      Yes use snapgene software

  • @starrani5264
    @starrani5264 3 роки тому

    thanks a lot,... so well explained , could you please explain more about NGG sequence ? thanks

    • @Justin-dv7ul
      @Justin-dv7ul 3 роки тому

      basically its the PAM sequence and I think its used as a way to identify the difference between the gRNA and the sequence

  • @ryanswan4145
    @ryanswan4145 3 роки тому

    A wonderful and informative video. I had one quick question, I'm looking into knockdown of a gene (INPP5D) in human genome but am wondering the main differences between the two options for homo sapiens provided by chopchop. If you could clarify the significance that would be very helpful. Thank you!

    • @jakelmer1985
      @jakelmer1985  3 роки тому

      Are you referring to the hg19 and hg38 versions of the human genome?

  • @shynamiri3932
    @shynamiri3932 2 роки тому

    Hi Jacob! very helpful video. Thanks. Anyone has any idea about how to make a plasmid that induces double KO for 2 genes? Or better to say, how to make a double KO cell line.

  • @zakiaal-hareth1508
    @zakiaal-hareth1508 2 роки тому

    Thank you, the video is a great help; but what about the scaffold RNA? is it included in the plasmid in addition to Cas9 encoding gene?
    In this case, we do not design the plasmid, we purchase it from some company!

  • @rahayupertiwi4299
    @rahayupertiwi4299 2 роки тому

    thank you so much sir. It really helps me a lot. Is it possible for you to share the power point? through Gdrive may be?

  • @dorfinhorg9458
    @dorfinhorg9458 3 роки тому

    Hey this video is super helpful and well made! Do you have any supporting literature you could provide?

  • @rajansandhu2471
    @rajansandhu2471 3 роки тому

    Very informative...have a little query...what that + written means ..is this target sequence found in coding strand or whether it will be targeting the coding strand..?

  • @danielv563
    @danielv563 10 місяців тому

    Dear Jacob, thank you for the nice lecture! I wonder, is there a company that if you seen the gRNA they will send you already the cloned plasmid?

  • @AbuBakar-yv5qx
    @AbuBakar-yv5qx 3 роки тому

    i really liked your video..can you help me in designing the sgRNA for MLo-1 gene of Triticum aestivum??