Both methods have the same purpose. Omega is newer version of ClustalW that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences.
@@semilogosonaike5145 Thank you for pointing the time. As explained, the dashes "-" represent "Gaps". It means that due to some evolutionary event in Macaques, there is a deletion of these amino acids.
Thank you for replying. I think I used the wrong terms for my question. From you explanation, “*” indicates that the alignment at an amino acid position is conserved. “:” indicates semi-conservation. But I noticed that some positions have neither “*” nor “:” nor “.”. How do we know the status of these positions when it is not indicated if they are conserved or not
@@semilogosonaike5145 MSA tries to find the conserve region from multiple sequences. Due to the gaps (which means part of the sequence is not present in any one of the species) that part of the sequences are excluded from any abbreviation.
Too much back ground noises, dear.
What those numbers after the names of species indicates in phylogenetic tree?
Awesome informative videos and simple explanation thank u so much im big faan of ur channel ❤❤
Wow Thanks :)
Make a video from where you get those sequence if I want to do this for corona virus what I have to do?
Will do that
You have explained very well
How to save phlogistic tree
superb explanation tq so much sir for such a informative video ..
can someone teach me how to make a phylogeny with many different sequences?
Which output file has conserved region?
A minimum of 2 sequence problem?? Help me sir
Great!
Bhai please volume thora ziada rakhayn
what does groups represent? in guide tree? Group 1: 2 sequences etc?
How I will download the tree from Clustal Omega?
Do let me know also
awaz hi nai he
Is there any difference between clustal w & clustal omega
Both methods have the same purpose. Omega is newer version of ClustalW that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences.
@@FarhanHaqj HMM profile to profile techniques means?
why you choose these specific sequences?
It depends on your question that what you want to address
@@FarhanHaqj i mean the sequences for multiple alignment. he told me why did u choose for example
human
cat
rabbit
fish
snake
etc
Best❤️
Thank you. Some of the base positions in the alignment do not have any scores. The score position are empty. What does that mean?
Can you share the time of the video
@@FarhanHaqj @ 4:00 In the alignment, some positions do not have any character to indicate their scores
@@semilogosonaike5145 Thank you for pointing the time. As explained, the dashes "-" represent "Gaps". It means that due to some evolutionary event in Macaques, there is a deletion of these amino acids.
Thank you for replying. I think I used the wrong terms for my question. From you explanation, “*” indicates that the alignment at an amino acid position is conserved. “:” indicates semi-conservation. But I noticed that some positions have neither “*” nor “:” nor “.”. How do we know the status of these positions when it is not indicated if they are conserved or not
@@semilogosonaike5145 MSA tries to find the conserve region from multiple sequences. Due to the gaps (which means part of the sequence is not present in any one of the species) that part of the sequences are excluded from any abbreviation.
Conserve region ko kia Karna ha
?