Hi, Could you please tell me that while finding the best substitution model, what should be used at missing data for protein alignment? Also, what is the J-model test? IS this substitution model the same as the Jmodel test?
I have a problem after making a phylogenetic tree. The bustrap value is less than 50.. even only 30. how to get bootstrap value up than 70 or closed to 100?
Sir, I am aligning sequencing in MEGA format, but after opening the same file, I am getting message "Align Sequences must be of equal length". How to fix this problem?
@@BEINGCURIOU66 I am getting true result when performing MSA using clustal omega, but when performing same with MEGA X, i am getting two types of errors..one is 'Align sequences must be of equal lemgth' and another error is 'unnamed base found at line 351'. I have also checked the nucleotides in the note pad it is correct, then how the error is showing in MEGA X. please help in the same.
@@rajatranjan974 make sure that all the seq that you have in note is partial seq anot if you have 1 genome seq. Then it creates issue u can check this also bcz i also had trouble doing this then i remove whole genome seq.
Thank you very much for this video. I was using MEGA for a long time, and with this video I have learned a lot of interesting features.
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
This is simply exceptional.
Thanks!
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
Thanks you so much for this insightful video. Please how can I hide the bootstrap values less than 70 as reported in many publications.
Thank you for this Sir.
Very welcome
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
Why do I have a small part of what should be displayed in Analysis Preferences (NJ/UPGMA)?
Thank you so much Sir.
from India
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
Hi, Could you please tell me that while finding the best substitution model, what should be used at missing data for protein alignment? Also, what is the J-model test? IS this substitution model the same as the Jmodel test?
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
Hello, sir very informative video. Sir, can you tell me that how can we copy the MSA from MEGA X to MS Word for publication?
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
I have a problem after making a phylogenetic tree. The bustrap value is less than 50.. even only 30. how to get bootstrap value up than 70 or closed to 100?
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
could you help me, when i choose the option to open find best dna/protein, the same file save as fasta doesn't show up,, what do i do?
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
Thank u so much
Very welcome
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
if the value in the phylogenetic tree is very low. what we can do?
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
Could please explain how to interpret phylogenetic tree
Sure, thanks for the suggestion. I will make a video on that and post it in the next couple weeks.
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html
Sir, I am aligning sequencing in MEGA format, but after opening the same file, I am getting message "Align Sequences must be of equal length". How to fix this problem?
Select the seq1 and paste the seqs that you copy from notes then go to alignment and perform clustalW you will get mSa
@@BEINGCURIOU66 I am getting true result when performing MSA using clustal omega, but when performing same with MEGA X, i am getting two types of errors..one is 'Align sequences must be of equal lemgth' and another error is 'unnamed base found at line 351'. I have also checked the nucleotides in the note pad it is correct, then how the error is showing in MEGA X. please help in the same.
@@rajatranjan974 make sure that all the seq that you have in note is partial seq anot if you have 1 genome seq. Then it creates issue u can check this also bcz i also had trouble doing this then i remove whole genome seq.
@@BEINGCURIOU66 I had done the same,but the issue remain same...
@@rajatranjan974 ohhh
hello sir, caN you give me your email, I'hVE SOME ISSUE WITH MY PARSIMONY TREE
You will also like this method for phylogenetic tree preparation. ua-cam.com/video/yhjVtkU8rFU/v-deo.html