Bioinformatics for Beginners | Course | Genome visualization using the online CGView tool

[@AmberT-o4r]

thanks, it's very helpful for beginners!

[@rubyaddo-danquah3422]

Biotechnology is one of the toughest courses I have ever done, it never made sense to me. Well done 🙏

[@bioinformaticscoach]

Thanks. Continue watching and I am sure you will love the tutorials.

[@calvincornell1066]

Awesome thank you very much, is there a way to show multiple genomes from different species using this?

[@lbroetto1979]

Hi, great tutorial video, and awesome channel. Queries slots are missing from my analysis and I dont know why, only reference slot are showing.

[@tanusaroha8197]

Good Job Sir. Kindly make a video on how to add cog content to the circular map using cgview comparison tool. Thanks.

[@muhammadakmal1414]

Great coach

[@nanaamoako5172]

Good Job

[@dorcasojo3501]

Thanks for the tutorial but my genome is larger (187,290,754bp) than the server can access, which other genome viewer can i use please?

[@anwaralqattan3553]

Thank you, good job! I would like to ask if you know how to add the COG content to this map using the CGView?

[@bioinformaticscoach]

I am yet to to do a video on that. But in the meantime you can check the tutorial here :paulstothard.github.io/cgview_comparison_tool/tutorials.html

[@anwaralqattan3553]

@@bioinformaticscoach Thanks I will wait for the video!

[@tanusaroha8197]

I have the same query as @anwar. Kindly upload a tutorial for that as soon as possible. Eagerly waiting.

[@bioinformaticscoach]

@@tanusaroha8197 The online cgview server does not support COG visualization. However the CGView Comparison Tool can assign and display COGs. I am planning on doing a video for that later on . If you are in a hurry you can check out a tutorial here : github.com/paulstothard/cgview_comparison_tool#using-the-cct-docker-image and paulstothard.github.io/cgview_comparison_tool/tutorials.html

[@tanusaroha8197]

Ok will look into that

[@karlageorginahernandezmagr4162]

Does anyone know how can I add a BGC to the map?

[@elMARABIYOCHO1989]

Is there a way a can manually add the CDS to my genome? I have a genome that is not on NCBI and I am trying to annotate it

[@bioinformaticscoach]

if it is a bacterial genome, you can annotate the genome using tools like prokka,rast or pgap. You can then use Artemis to visualize the genbank file and add the CDS,GC content, etc.
You can check my video on Artemis to learn how to do that.

[@elMARABIYOCHO1989]

@@bioinformaticscoach . Hi. Thanks for the reply. It's a phage genome.