Dear Professor, Thank you for a great video. I was performing Fst analysis between my data of 3 breeds but I was creating 8 pairs manually to find Fst in each group. this is clearly a lot helpful. I wanted to ask if you can explain a bit about GWAS analysis in animals. that would be a great help as there isn't anything on at least youtube that explains GWAS steps in animal studies.
Dear Prof. thank you for your tutorial, they are very clear and interesting. I tried to follow the example but I have trouble when use "system(str_c("plink --bfile etc.). After this command, no QC is performed and the new recoded file is not created. R returns me [1] 127. Do i have to set some option in R for plink? how can i solve? thank you
if on windows, type the full name of Plink (i.e Plink1.9.exe) instead of just "plink". If you are on Linux then you just type "./plink" or whatever you named the main plink program file.
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Dear Prof. Gabor, Thank you so much for the great video. This is very easy to follow.
Very helpful and clearly explained. I enjoy watching your videos.
Always helpful. I also thank-you for your time
Dear professor Gabor. Thank you for the useful video. I would like to know if it is possible to obtain the node values from the script presented?
Dear Professor, Thank you for a great video. I was performing Fst analysis between my data of 3 breeds but I was creating 8 pairs manually to find Fst in each group. this is clearly a lot helpful. I wanted to ask if you can explain a bit about GWAS analysis in animals. that would be a great help as there isn't anything on at least youtube that explains GWAS steps in animal studies.
I want to focus on GWAS in the near future (mid term) so something like this will come...
Dear Prof. thank you for your tutorial, they are very clear and interesting. I tried to follow the example but I have trouble when use "system(str_c("plink --bfile etc.). After this command, no QC is performed and the new recoded file is not created. R returns me [1] 127. Do i have to set some option in R for plink? how can i solve? thank you
are you using your own data? if yes what type of PLINK file do you have? (.ped or .bed)?
if on windows, type the full name of Plink (i.e Plink1.9.exe) instead of just "plink". If you are on Linux then you just type "./plink" or whatever you named the main plink program file.
@@UmerBaig117 thank you very much, I added the full path of plink.exe and it is works!