Handling Human gene annotation file (GTF) with advanced Linux command | Bioinformatics Course

In this lecture, we dive deep into advanced Linux commands like sed, grep, awk, cut, sort, and tr, unlocking their full potential for data manipulation and processing.
But that's not all! We also specialize in handling Human gene annotation files (GTF) using these advanced Linux commands. 🧬💻 Our tutorials guide you through the intricacies of parsing GTF files, identifying protein-coding genes, and extracting valuable insights from genomic data.
Join our community of learners as we explore the fascinating intersection of Linux command-line mastery and genomic analysis!
Subscribe now and embark on a journey to master advanced Linux commands and revolutionize your approach to gene annotation and data analysis. Let's unleash the power of Linux together! 🚀🔍
#linuxcommands #Bioinformatics #Genomics #DataAnalysis #bioinfobyte

[@traveller_of_lyf]

How to download genome file( .fna) from ncbi? (File which you are working on 39:21 ) and also how to download annotation file( .gtf file) from ncbi?
Please provide the steps.

[@bioinfobyte]

I have covered it in this video: Basic Linux Interview Questions for Bioinformatician | Linux QnA | PART 1 | Bioinformatics course (ua-cam.com/video/s2NsP7RZsoM/v-deo.htmlsi=lyF_QvsR_btV9x61)
Time: 12:09
All the steps are explained to download annotation and FASTA file from NCBI database

[@traveller_of_lyf]

@@bioinfobyte Okay. Thank you so much!

[@charithr6330]

Could you provide the input gtf files. It'll be helpful to practice

[@bioinfobyte]

drive.google.com/file/d/1Q_Gyoer6u1L4LibmYm2Ark98DSFXn2GK/view?usp=sharing
please find the input file

[@charithr6330]

@@bioinfobyte Thank you