Hello Houda, here is a link to the publication. you can find the data in the "supplementary material" section. link.springer.com/protocol/10.1007/978-1-4939-6682-0_14
thank you very much for your valuable information. but I want to ask a question, is there an alternative test of Shapero test for big genomic data (more than 5 million)
Thank you for the nice presentation. I have a problem. I can't find the data the author and you have used in your tutorials. I will be glad if you could kindly share the data with me. I need it badly.
Hello Mohammad, I'm glad it was helpful. Here is a link to the publication. You can download the data in the "supplementary material" section link.springer.com/protocol/10.1007/978-1-4939-6682-0_14
Perhaps it should be better to use the "merge" function to merge the p.values and the map, otherwise the markers will be assigned randomly to the genome position
Hi, great video. Could someone provide a solution to this code error? > plot(gwasresults$Yield,col=gwasresults$chr,ylab="-log10.pvalue", main="Naïve model (K=NULL,n.PC=0)",xaxt="n",xlab="Position",ylim=c(0,14)) the error message..... Error in plot.xy(xy, type, ...) : invalid color specification "1A" Thank you
Thanks for the explanation, could you please put the link for genotypic and phenotypic data
Hello Houda, here is a link to the publication. you can find the data in the "supplementary material" section. link.springer.com/protocol/10.1007/978-1-4939-6682-0_14
@@jrbiotekfoundation6781 I am sorry, I cannot access the data. Could you please share it on google drive?
@@jrbiotekfoundation6781 Thank you very much
thank you very much for your valuable information. but I want to ask a question, is there an alternative test of Shapero test for big genomic data (more than 5 million)
Thank you so much for good teaching. Would you please put the link for your last video?
Great talk. Thank you Catherine.
Nice presentation. Thank you so much
Great work! What version of R should I use? Which will be helpful to install all packages.
The latest version should be fine.
Thank you for the nice presentation. I have a problem. I can't find the data the author and you have used in your tutorials. I will be glad if you could kindly share the data with me. I need it badly.
Hello Mohammad, I'm glad it was helpful. Here is a link to the publication. You can download the data in the "supplementary material" section link.springer.com/protocol/10.1007/978-1-4939-6682-0_14
Perhaps it should be better to use the "merge" function to merge the p.values and the map, otherwise the markers will be assigned randomly to the genome position
Thank you so much for offering this helpful lecture. could you please send me a link for part 1 as I could not find it.
Sorry which lecture you are referring to for GWAS tutorial? (Seth Moray?) Can you provide here the link.
Did you find it?
I am interested too
I guess this is the link for GWAS overview from Dr Seth Murray that she refers to: ua-cam.com/video/M86WvlowcRo/v-deo.html
how download data set
Thank you very much!!
There is a small mistake in line 146.
PCA4
I really appreciate if someone explains the variable "Yield", what does it mean?
Nice video helps a lot. Is this code available in some document?
Many thanks for good presentation. Could you please send me the R scripts and cods. Many thanks in advance
Can you share the link of the script please?
if they reached you out and sent it to you could you please send it to me?
Anyone who can provide me with LD decay r code line I will appreciate.
IS THIS SNP DATA? how to convert it to 1, -1
got to first convert the column into vector/carachter and then reconvert them in numeric
Hi, great video. Could someone provide a solution to this code error?
> plot(gwasresults$Yield,col=gwasresults$chr,ylab="-log10.pvalue",
main="Naïve model (K=NULL,n.PC=0)",xaxt="n",xlab="Position",ylim=c(0,14))
the error message.....
Error in plot.xy(xy, type, ...) : invalid color specification "1A"
Thank you
@risefromyourpain
# Define a color palette
palette