Hello your tutorial is great. I would like to ask some questions. My data is relatively large resequencing data and cannot be imported into Tassel5. What should I do? Thanks
thank you for wonderful tutorial video, could you please describe the model script so that I can easily run it, because few commands are not getting run because of threshold limit as per my data.
you can use this to plot your data in Mb, ------------------------- # plotting the values tiff("LD_decay.tiff", height=4000, width = 5500,units = "px",res=500,bg="white") mar.default
@@MohsinAli-xn4cl thank you so much sir .....sir how can we interpret the output plot for our manuscript thesis etc ...if u can guide me through this also i will be so very thankful....
sir i have generated the plot following the video.....however in output plot …the exponential values on X axis are missing ..how can i show u my plot so that u will see it its correct or not?
this command line use to Plotting the values and saving as PNG png("LD_decay_sameSNP_without_impute.png", height=10, width=15, units="in", res=300) mar.default
Thank you for helpful video
Very helpful video. Thank you
Your Videos are highly useful Thank you soo much and please keep posting.
Thank you for this useful video
Perfect, great tutorial thank you very much, appreciate it.
Loved it thanks....
having problems with number of cols:
> file
Hello your tutorial is great. I would like to ask some questions. My data is relatively large resequencing data and cannot be imported into Tassel5. What should I do? Thanks
Thanks for appreciating tutorial. I would highly recommend you to use tassel5 command-line version to do the analysis.
when to show us how to perform multi-trait GWAS in r? Thanks in advance.
assalamualaikum sir I cannot find the r script please tell me how to get this script
Awesome! Thank you!!
thank you for wonderful tutorial video, could you please describe the model script so that I can easily run it, because few commands are not getting run because of threshold limit as per my data.
Does anyone know how to change the x-axis to kb or even mb? Thanks
you can use this to plot your data in Mb,
-------------------------
# plotting the values
tiff("LD_decay.tiff", height=4000, width = 5500,units = "px",res=500,bg="white")
mar.default
how to show LD in a slected region?
You can use haploview software to visualize the LD in a selected region.
Hi Mohsin. I have run your script to plot the LD plot from tassel output and it generated the pdf file as well but pdf file is not opening.
Please open with foxit reader
when i click on link of R script in the description ...it says page not found ....plzzz help me regarding this
github.com/mohsinali1990/My_scripts
@@MohsinAli-xn4cl thank you so much sir .....sir how can we interpret the output plot for our manuscript thesis etc ...if u can guide me through this also i will be so very thankful....
sir i have generated the plot following the video.....however in output plot …the exponential values on X axis are missing ..how can i show u my plot so that u will see it its correct or not?
Could you please tell what C exactly means here?
this command line use to Plotting the values and saving as PNG
png("LD_decay_sameSNP_without_impute.png", height=10, width=15, units="in", res=300)
mar.default
It was a very helpful video. Could you please suggest me a command for LOESS based LD decay where the threshold and averaged LD decay intersects?
It's nice to see such helpful videos. But sir in my case it is showing error while running the command modelC. Can you please help me to sort this out
Can you please provide an explanation of the final pdf file, what do different lines mean?
can anyone please email me this R script???