End-to-end microscopy imaging with MCMICRO and MCMICRO for HTAN

Our October 2023 webinar, presented by Cera Fisher and Boris Majić, features the MCMICRO software tool on the Cancer Genomics Cloud, originally developed by collaborators in the Human Tumor Atlas Network (HTAN) consortium. MCMICRO is designed for detailed analysis of cellular structures through highly multiplexed tissue imaging - that is, whole-slide tissue imaging of samples with multiple channels of protein antibody staining. Analysis of these images makes the resolution of spatial sequencing data possible, underpinning techniques such as single-cell spatial transcriptomics, but presents several challenges to researchers. MCMICRO handles much of the processing in a single pipeline.
-- REFERENCES AND RELATED --
www.nature.com...
mcmicro.org/
cgc.sbgenomics...