Convert SNP data from one format to another in few clicks. Part 1| HapMap | VCF | Plink
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- Опубліковано 11 жов 2024
- In this tutorial, I used TASSEL software to convert SNP data into different data formats (e.g., VCF and Plink). The TASSEL tutoriL data was used for this tutorial (tassel.bitbuck.... However, there many other software's that could be used to transform genotypic data into different format.
GWAS analysis using TASSEL software:
• Genome-wide Associatio...
For more detail visit following link:
bytebucket.org...
simple is the best, thank you
Dear Sir,
Pls, make tutorial on circos
Thanks
Thank you for the suggestion, I will try my best to make short tutorial on circos.
@@MohsinAli-xn4cl Thanks Sir
How we can merge two vcf files?
There are many software’s and ways to merge VCFs. I used gatk software to merge multiple VCFs. I hope the following command-line example will be helpful:
./gatk-4.2.1.0/gatk MergeVcfs -I ./chr1.vcf.gz -I ./chr2.vcf.gz -I ./chr3.vcf.gz -I ./chr4.vcf.gz -O final.merge.filter.vcf.gz
@@MohsinAli-xn4cl many thanks