Convert SNP data from one format to another in few clicks. Part 1| HapMap | VCF | Plink

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  • Опубліковано 11 жов 2024
  • In this tutorial, I used TASSEL software to convert SNP data into different data formats (e.g., VCF and Plink). The TASSEL tutoriL data was used for this tutorial (tassel.bitbuck.... However, there many other software's that could be used to transform genotypic data into different format.
    GWAS analysis using TASSEL software:
    • Genome-wide Associatio...
    For more detail visit following link:
    bytebucket.org...

КОМЕНТАРІ • 7

  • @mahmutaydin083
    @mahmutaydin083 2 роки тому +1

    simple is the best, thank you

  • @VinaySharma-eu6nj
    @VinaySharma-eu6nj 3 роки тому +1

    Dear Sir,
    Pls, make tutorial on circos
    Thanks

    • @MohsinAli-xn4cl
      @MohsinAli-xn4cl  3 роки тому

      Thank you for the suggestion, I will try my best to make short tutorial on circos.

    • @VinaySharma-eu6nj
      @VinaySharma-eu6nj 3 роки тому +1

      @@MohsinAli-xn4cl Thanks Sir

  • @MrAbidkhan111
    @MrAbidkhan111 Рік тому

    How we can merge two vcf files?

    • @MohsinAli-xn4cl
      @MohsinAli-xn4cl  Рік тому +2

      There are many software’s and ways to merge VCFs. I used gatk software to merge multiple VCFs. I hope the following command-line example will be helpful:
      ./gatk-4.2.1.0/gatk MergeVcfs -I ./chr1.vcf.gz -I ./chr2.vcf.gz -I ./chr3.vcf.gz -I ./chr4.vcf.gz -O final.merge.filter.vcf.gz

    • @MrAbidkhan111
      @MrAbidkhan111 Рік тому

      @@MohsinAli-xn4cl many thanks