1. Phylogenetic analysis of pathogens(lecture - part1) -
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- Опубліковано 4 лип 2024
- Phylogenetic analysis of pathogens:Staphylococcus aureus, host switching and antibiotic resistance
Lecture by professor Ross Fitzgerald, filmed at The Roslin Institute, March 2015. (Recommended UA-cam playback settings for the best viewing experience: 1080p HD)
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Content:
a. Phylogenetics: Examining the evolutionary relationships of organisms
b. How to read a phylogenetic tree
c. Phylogenetic tree terms
d. Measure of support for nodes:Bootstrapping
e. Other phylogenetic tree formats ©Prof. Andrew Rambaut, epidemic.bio.ed.ac.uk/how_to_r...
Wow what a great theacher ... To explain this such a great way .. I Enjoy it alot !
Could you say a little bit the reason to use out-group in phylogenetic tree analysis? how to choose it? or any outgroup organism can be included to root the tree?
i actually can not interpret the phylogenetic tree because i dont know about distance matrix, neighbour joining method to explain but when i saw the lecture of your on youtube made me understand about the interpretation of phylogenetic tree. i want to send my tree can you plz interpret this for me, it is very urgent. i highly appreciate your lecture
thank you
Well defined video!! Thanks!
COVID 19
Anyone?
Just came so that I can read those stats.
Gr8 Talk!
Omg it's Professor Moriarty...
what is the unit of genetic distance?
hello I have to make a project with figtree and the teacher said that she wanted at least 95 of bootstrap puntuation in each label I have problems because I got 100 in someones but otherones are really low. Please help me I don´t know what I need to do to edit in seaview and get a higher puntuation
thx
Bootstrap (BS) values depends for each node or clade-how closely related each species/genus. You can't expect always over 95% BS in your molecular tree/backbone of this tree, it's a natural arrangement based on DNA analysis.
Just delete the taxa that make the branch dont have 95%... If still can't delete your teacher..
@@IkanPediaMalang 😂
sir could tell me how make bootsrap values
Bootstrap/posterior probability value comes automatically when you read your phylogenetic tree either open with treeview/figtree or dendroscrope software. In this study values come from MrBays analysis (posterior probability) so far.
tx
We explained
Ethan Hawke