Phylogenetic Tree Construction

In this video, we will use the MEGA software to construct the phylogenetic tree of the protein sequences from different plant species. We will learn that how to extract and arrange the Protein family related genes and used them to construct the Phylogenetic tree.
Link of #itol: itol.embl.de/
Phylogenetic Tree Contruction
Evolution
Phylogenetic tree
Mega phylogenetic tree
How to read phylogenetic tree
How to do the muscle alignment
How to do the clustlW alignment
How to read phylogenetic tree
Clint Explains Phylogenetics - There are a million wrong ways to read a phylogenetic tree
How to construct newick tree
How to use MEGAX
Phylogenetic Tree Basics
How to construct beautiful phylogenetic tree in MEGAX
Easy way to construct beautiful phylogenetic tree
Phylogenetic tree for beginers
#Genomewidestudy
#bioinformatics
#phylogenetic
#phylogeny

[@funnyworld_19]

Dear dr. sab thank you so much i have learned more from this lecture because it very easy method to construct the phylogenetic tree.

[@genomewidestudy]

Thanks for liking

[@muhammadmubeen8192]

it's really beautiful. thank you for making informative and helpful videos.

[@genomewidestudy]

Thanks for comment.

[@mantibiswas2307]

Thank you so much

[@genomewidestudy]

You're most welcome

[@krishnasreeGundavarapu]

very helpful.. thank you..

[@genomewidestudy]

You're welcome!

[@mahakhan4468]

Dr sahib you are doing a tremendous job 👏

[@genomewidestudy]

Thanks for comment

[@haithamal-madhagi7769]

God bless you bro❤

[@genomewidestudy]

Thanks, keep watching and remember in your prayers

[@arutselvanrameshkumar4922]

Good video. Keep it up.🥰

[@genomewidestudy]

Thank you, I will

[@bahaddinahmad5823]

Useful 😊

[@genomewidestudy]

Glad to hear that

[@ast2560]

thank you for your information, really perfect video

[@genomewidestudy]

So nice of you. Thanks

[@mahakhan4468]

Informative ❤

[@genomewidestudy]

Thanks. glad tit is informative

[@i_like_it5339]

very good microphone

[@genomewidestudy]

Thanks

[@N5033]

nice my pakistani friend . you made my day

[@genomewidestudy]

Glad to hear that. Its my pleasure

[@mohamedsayedhelal6449]

Actually i want to add some descriptive jnformation on the tree as a marking

[@genomewidestudy]

You can edit it in Paint or PPT or any other tool, in which you have the expertise

[@HealthyBitesAlways]

Well explained

[@genomewidestudy]

Jazak Allah for comment

[@bukharismaus6604]

Great

[@genomewidestudy]

Thanks for comment

[@videogeonic6424]

Can you provide me the protein sequences file..!

[@genomewidestudy]

Why not you find by yourself

[@bukharismaus6604]

today i tried the same procedure, i construct the tree well, but when i put the newick seq in Itol, the infromation was invalid,

[@genomewidestudy]

May be you missed paranthesis or make space during copy paste.

[@MrRamaeri]

I would like to extract the promoter sequences for 50,000 genes. I have both the Gene GFF file and the genome file available. Among 50,000 genes, 25000 genes are - strand.
Could you suggest some other tools?

[@genomewidestudy]

TBTool is the best opotion. How to extract the promoter region, you will find the required video within the day or two. Thanks

[@genomewidestudy]

Your required video is uploaded. have a look.
ua-cam.com/video/3-VtBbj22wA/v-deo.html

[@AzqaAshraf-n9c]

Do you have the link of this software, mega x i couldn't download the right one

[@genomewidestudy]

you can use any MEGA version to download the newick file

[@fasihakhan5319]

can we do three strains together

[@genomewidestudy]

Yes, you can

[@RjAtifAyub]

'b' ka sign ata hai ke cancel krna hai ya ignore krna hai ye kyà error hai?

[@genomewidestudy]

b ka sign kahan ata hay bhai.

[@RakeshKumar-sn5ce]

If I am uploading Newick Export data demonstrate invalid branch length 21 in ITOL software..pls help regarding the same

[@genomewidestudy]

Have you tried the copy paste method?

[@RakeshKumar-sn5ce]

​@@genomewidestudy yes

[@RakeshKumar-sn5ce]

But unable to solve it .suggest

[@genomewidestudy]

there is problem in your sequence, please check the each sequence carefully,

[@genomewidestudy]

Best way is take 10-12 sequences and try on them, if you get result successfully, it's mean the error is due to your sequences. so them carefully