Genomics in practice - Introduction to R and RStudio

Accompanying text, including any code, for this video in my "Genomics Boot Camp" book, available online at:
genomicsbootca...
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[@chintavarambalachiranjeevi7544]

Thank you, Professor, for your detailed and clear explanation.

[@user-ri4wn7jh7v]

Thank you for the great presentation.

[@ashfaquekanhar9630]

Well explained.
Yet I am unable to understand it completely but it's good to learn new things 😊

[@umitbilginer9811]

Hello sir, thanks for the great videos.

[@GenomicsBootCamp]

Glad you like them!

[@kunjanparikh7669]

Thank you so much

[@hayaalmly6083]

Thank you this is really helpful.. I'm wondering if you have some knowledge regarding the microbiome data analysis

[@GenomicsBootCamp]

Thanks! Unfortunately no substantial knowledge of the microbiome, or its analysis. Never tried it...

[@kartikmadankar4598]

Thank you so much sir

[@GenomicsBootCamp]

You are welcome! Have a nice and productive time on the channel!

[@ridamohammedmediouni7904]

Hi professor, thank you for the valuable videos !, my question is: can we use the same protocole on plant data ? , are there any differences ?

[@GenomicsBootCamp]

Hi, The data analysis approaches on this channel are applicable for any diploid organism, so also diploid plants. PLINK handles biallelic SNP data in diploids. I don't know how the polyploid data is handled or the software for that.
As for R there are a wide range of packages, so maybe higher chance there for polyploids...
To all: Probably a good topic for another video in the future...? If anyone has info on handling SNP data from polyploids, please let me know. I can offer you to put you into the video credits :)

[@sehrishkakakhel3643]

Great

[@lucasf.c.y.dossoukpongan4684]

Please Professor, can we have a video on breeding simulation packages in R like Alphasimr and how to use them for a data simulation in genomic