An elegantly intuitive view of evolution

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  • Опубліковано 18 лис 2024

КОМЕНТАРІ • 485

  • @Nanorooms
    @Nanorooms  5 місяців тому +17

    To try everything Brilliant has to offer-free-for a full 30 days, visit brilliant.org/NanoRooms . You’ll also get 20% off an annual premium subscription.

    • @gregorysagegreene
      @gregorysagegreene 5 місяців тому

      Just one thing ... are you hinting at all that 'junk DNA' we have is perhaps there for the next speciation event(s)?
      - Very good video, btw. 💜👍

  • @Nanorooms
    @Nanorooms  5 місяців тому +328

    Nah, I’d evolve

    • @phiality9070
      @phiality9070 5 місяців тому +50

      I alone am the evolving one.

    • @degariuslozak2169
      @degariuslozak2169 5 місяців тому +5

      OOOOOOOOOOOOHHH!!!🔥🔥🔥

    • @wasordx3245
      @wasordx3245 5 місяців тому +15

      Stand proud, you have evolved, but nah I'd be more fit

    • @MajorLeeAwesome
      @MajorLeeAwesome 5 місяців тому +3

      Throughout space and soup, I alone am the Primal One.

    • @shezyam460
      @shezyam460 5 місяців тому +4

      You were magnificent Nanorooms. I will never forget you for as long as I live.

  • @Terraforge-m9b
    @Terraforge-m9b 5 місяців тому +224

    The researchers missed a golden opportunity to find out what snake legs look like

    • @Soken50
      @Soken50 5 місяців тому +12

      Right? I wanted to see that!

    • @Lilbluepenguin
      @Lilbluepenguin 5 місяців тому +8

      Though I think it would be kind of hard to ask a funding body like NSF “hey can you give us money so we can give this snake legs” 😂😂

    • @Soken50
      @Soken50 5 місяців тому +34

      @@Lilbluepenguin You'd obviously have to rephrase that in scientific terms and dazzle them with amazing applications like fixing malformations in human fetuses in the future.

    • @BartdeBoisblanc
      @BartdeBoisblanc 5 місяців тому +8

      They could compare the genes of a snake to a legless lizard,might reveal something.

    • @Terraforge-m9b
      @Terraforge-m9b 5 місяців тому +1

      @@BartdeBoisblanc Not the same, it just wouldn't be enough of an abomination.

  • @cristopherpuga1637
    @cristopherpuga1637 5 місяців тому +211

    Physicist here. I'm about to apply to grad school by the end of the year, and you might be the reason I can't stop thinking about applying to biophysics. Great content!

    • @Nanorooms
      @Nanorooms  5 місяців тому +25

      I’m two years away from that. Lmk how gradschool goes!

    • @NamedSoni
      @NamedSoni 5 місяців тому +3

      And here I am learning CS and bio. Hope this becomes relevant in future industry.

    • @cyberbiosecurity
      @cyberbiosecurity 5 місяців тому +1

      @@NamedSoni Amazing choice!

    • @fyang1429
      @fyang1429 5 місяців тому +1

      I am studying structural bio and I’d say don’t- it’s a terrible field with insane work hours and whether you publish depends almost entirely on luck

    • @firecracker26241
      @firecracker26241 5 місяців тому +3

      Biophysicist in grad school here. Do it!

  • @spliter88
    @spliter88 5 місяців тому +54

    One thing I noticed in my own evolution experiments is that natural disasters are a necessary part of evolution and diversification.
    If all you have is limited food and evolve organisms they'll just end up more and more efficient, but very similar behaviours, and very, very rarely you'll end up with a version that changes things around.
    However if you introduce periodic disasters that randomly kill off big chunks of population then you'll quickly end up with much more diverse ecosystems.
    I suspect that's because of bacteria getting stuck on local maxima. Once they reach it, then any genetic deviation away from that will necessarily reduce their fitness and become quickly outcompeted by those that end up closer to the local maxima.
    Random natural disasters create a temporary opportunity where reduction of fitness isn't a death sentence and you have a few dozen to hundred generations where you're able to experiment pathways that require the bacteria to become less fit but without having to start over from a random genotype. Then a new maxima is often found and the old maxima becomes just a specialized niche.

    • @ratvomit874
      @ratvomit874 5 місяців тому +17

      The crazy thing is that this isn't even limited to biological evolution, we see the same thing in technological advancement as well. It's quite possible that bicycles only came into existence because of the 1816 Year Without a Summer which decimated horse populations worldwide and forced people to look for alternative means of transportation. If that never happened it's entirely possible we might still be stuck with horses to this day (remember that development of mechanical propulsion drivetrains for automobiles and paved roads was really first done for the bicycle, there's a reason the modern car came so soon after the bicycle)

    • @bluemonstrosity259
      @bluemonstrosity259 5 місяців тому +2

      Correct and profound comment. Much appreciated.

    • @szymonbaranowski8184
      @szymonbaranowski8184 5 місяців тому

      not this way, evolution improves when ecosystem grows and it grows with overall stability and size, mass dying off also causes fall of diversity... coming of cellulose itself caused massive changes in ecosystems without mass dying

    • @theapexsurvivor9538
      @theapexsurvivor9538 5 місяців тому +1

      Makes sense as evolution is driven by niche competition. If there's only one niche and it's being equally competed for, the only way to evolve is to be more efficient. However if there's fluctuations in that niche, or multiple close niches that can be competed for, it allows more opportunities for something less efficient in the initial niche to develop.

  • @shir_azazil
    @shir_azazil 5 місяців тому +50

    if you can make mice amputee by giving them snake ZRS, does that mean you can give snakes their legs back by giving them mice ZRS?

    • @sobbski2672
      @sobbski2672 5 місяців тому +24

      Probably not since ZRS is part of a network of genes. Although disabling the ZRS gene disrupts limb growth, restoring it in snakes wouldn't necessarily make them grow legs again.

    • @travcollier
      @travcollier 5 місяців тому +16

      ​@@sobbski2672Though it would be interesting to see what other genes in the 'make legs' pathway were co-opted for novel functions after they lost their primary function.

    • @bounceday
      @bounceday 5 місяців тому

      Maybe

    • @CandideSchmyles
      @CandideSchmyles 5 місяців тому +1

      Millipede leg growth genes would be cool

    • @PierreLucSex
      @PierreLucSex 5 місяців тому

      @@CandideSchmyles yeah, let's test it on your children first

  • @bradbradford8576
    @bradbradford8576 5 місяців тому +25

    Everyone's understanding of evolution is incomplete, but still, thanks for making that slightly less so

  • @perrywilliams5407
    @perrywilliams5407 5 місяців тому +6

    What a great presentation! The one thing that continues to "anthropomorphize" the process of evolution (it is used in every explanation I've ever seen, including here) is describing a genetic variation being "selected." That may have a very specific meaning within evolutionary science, but to a layman, it sounds like agency. Randomized processes have no agency; they do not act out of volition because a process does not have a will. May I suggest as an alternative to describe selection as the result of probabilistic math? A fitter variant has a statistical advantage over time, sort of like playing with loaded dice. You cover that quite well latter on, and kudos for doing so, but it is more technical and so less accessible for regular folks.

  • @dantefernandez2455
    @dantefernandez2455 5 місяців тому +19

    Excellent video and the animations are impeccable supplementary learning tools! As a BioChemE student I would love to see more videos that go into depth when it comes to specific mechanisms. For instance, 7:50 could have been an entire video:
    1.) You could explain the active site's original purpose and go into the residue interactions and the step by step mechanistic process.
    2a.) Explain the specific proteins/processes involved with duplicating a section of a genome.
    2b.) Explain how both copies of the gene would share the same promotor region (I assume).
    3a.) Go into the roll introns and exons play (idk if that protein you showed even came from a eukaryote, so ignore if not applicable) in sometimes splicing out the duplication to retain original function in some cells and have other cells not splice the copy and how that would allow that copy to evolve a unique function over time.
    3b.) Go into the residues that facilitate the dimerization.
    4.) Extrapolate from the previous points how complex and modular quaternary structures and metabolic pathway can come out of this to evolve from a single cell to a tree, mushroom, or even a human over time!
    I don't know what your analytics say but I feel like tons of people are starved for long form content. Don't be afraid to go into excruciating detail, we're a curious bunch!

  • @vipierozan99
    @vipierozan99 5 місяців тому +64

    So basically, feature flags?

    • @mikemhz
      @mikemhz 5 місяців тому +8

      Or backwards compatability

  • @sobbski2672
    @sobbski2672 5 місяців тому +9

    Keep it up man. Im starting my doctoral program this summer; your videos are excellent! What do you use to create your biomolecular videos, PyMOL?

    • @Nanorooms
      @Nanorooms  5 місяців тому +5

      The blender add-on I linked below

  • @rockapedra1130
    @rockapedra1130 5 місяців тому +68

    This video has really excellent content but IMHO, it needs to be slowed down, filled in and expanded. Maybe even broken into a several videos? It's a bit like super speed Cliffs Notes as it is! Keep up the good work!

    • @rybzym.m790
      @rybzym.m790 5 місяців тому +13

      I do agree it is fast, but I don't think it should be different videos IMO, I think it should be 20 mins and with a bit more explanations on some of the diagrams.
      I get a vibe of 3Blue1Brown from this video, but it lacks the basics that 3B1B sometimes gives in maths, and I believe here in biology it can really be useful of course with his fingerprint containing the whole video.
      Maybe add the extra details and some of the resources in Patreon?
      In any case I wish for this channel to grow much more as youtube doesn't have a lot of deep Biology channel, my first thought would be the thought emporium but they do more of experiments, not really illustrations on how the basic mechanisms of Biology work.
      Anyhow!, this is my small opinion as a science youtube binge watcher! Best of luck Nano!

    • @KWifler
      @KWifler 5 місяців тому +4

      It's a good speed for modern young people. It's about average for most of the videos I watch, anyways. Although, whenever I try to show a video to a boomer, they get confused, LOL

    • @pizzainc.1465
      @pizzainc.1465 5 місяців тому +4

      Modern young people? Boomer? lol in all caps as a conclusion? Sus 🧐, are you sure you are not the boomer? Nobody talks like that, especially not on scientific UA-cam channels

    • @rockapedra1130
      @rockapedra1130 5 місяців тому

      @@rybzym.m790 good ideas!

    • @rockapedra1130
      @rockapedra1130 5 місяців тому

      @@KWifler I was trying to say that it would be more educational if it had a more controlled pacing and a longer exposition. This attitude of name calling and believing your cohort is sooooo advanced is just your immaturity showing.

  • @GustavoOliveira-gp6nr
    @GustavoOliveira-gp6nr 5 місяців тому +5

    The content is very good and the animations as well, but the speed is a little to fast for me. I am not familiar with some biological terms and the dna and genes pictured and you skip it too fast and i dont get it sometimes.
    Also, I may have gotten it wrong but the way I see it you made some big claims and questions in the beggining of the video but it was not clear to me what are the objective answers, you said just mutations dont explain the variety we observe in evolution but in my eyes you just explained more ways of mutations, so i was left wondering what were the answers you promised in the beggining. It would be very helpful if you could provide a clear summary of the points you are making in the end of the video.

  • @eduardschreder1623
    @eduardschreder1623 5 місяців тому +14

    thanks for putting all the paper links in the description

    • @Nanorooms
      @Nanorooms  5 місяців тому +7

      Would be unethical if I didn’t haha

    • @snipergaming2639
      @snipergaming2639 5 місяців тому +1

      @@Nanorooms Hey, these are really great videos. Could you tell me how they're edited and what you use to animate them? I'm thinking of doing a similar thing in the future> Not copying though hahha

  • @JoeTaber
    @JoeTaber 5 місяців тому +4

    It turns out repair rate is is not homogeneous. That is, some genes are repaired with near 100% accuracy, while other genes are allowed to have errors.
    "‘DNA spellchecker’ is preferentially directed towards more important parts of chromosomes that contain key genes." - Center for Genomic Regulation article
    *Differential DNA mismatch repair underlies mutation rate variation across the human genome* - DOI: 10.1038/nature14173

    • @Angelmou
      @Angelmou 5 місяців тому +3

      Some lineages of life also have less efficient DNA repair mechanism. Squids are a good example for that.

  • @Scarybug
    @Scarybug 5 місяців тому +3

    This is really great!
    Please do consider adding captions in your future videos. It makes them much more accessible and UA-cam's auto captions are terrible.

    • @briace9939
      @briace9939 5 місяців тому +1

      Literally using youtube auto captions and they are working fine

    • @Scarybug
      @Scarybug 5 місяців тому +1

      @@briace9939 if you don't care about getting all the words right sure

    • @the_real_aristotle
      @the_real_aristotle 5 місяців тому

      U can try your phones auto caption

    • @Scarybug
      @Scarybug 5 місяців тому

      @@the_real_aristotle Auto caption are always terrible for science videos because they don't understand rare words very well. They also don't handle non American or British accents very well. They also don't punctuate properly. Providing hand made captions means people who can't hear well and people with auditory processing issues have a much better time understanding your content. UA-cam provides creators with tools to edit the auto captions into something that is actually correct.

  • @KevinWang-jc1bx
    @KevinWang-jc1bx 5 місяців тому +5

    Thank you for another marvelously polished video! Just recently found your channel and can't stop myself from watching all of your systems biology videos. From your mathematical and systems biology background, what are your thoughts on how the mathematical basis for biological processes fits into the evolutionary model? Do you think these mathematical properties are coincidentally emergent, guide evolution, or something else?

    • @Nanorooms
      @Nanorooms  5 місяців тому +3

      I’m still currently a novice on the subject. I’ve only recently learned of such a thing in more detail from my friend who I credited at the end of the video. I might make a video on that topic sooner or later. But in general, it’s pretty gosh darn fascinating. He was even able to model how microbes can evolve together in a community!

  • @InforSpirit
    @InforSpirit 5 місяців тому +2

    I think one of the most underspoken thing is horizontal gene transfer events.
    Endosymbiotic transfer, where some reason smaller cell organism got trapped inside of bigger cell (plastids like chloroplast, mitocondria)
    Viral DNA transfer: Immunology supressing gene transfer maybe is behind of mammal blacenta evolution.
    Bacteria, funcal gene transfers to animals (more common with smaller species).
    Not to even mention multicellural ecosystem symbiots. Human gut and skin has so many beneficial bacterials that are not part of human genome adn have effect on fittness.

  • @GenomeNinjaScience
    @GenomeNinjaScience 5 місяців тому

    Hi @NanoRooms! Your content is awesome. I find it engaging and informative! 💛I also really like the animations you use in your video. I was curious, What software do you use to make them? Is this a question you can answer? Thank you for any time and attention that is provided to this comment!

  • @MegaMieb
    @MegaMieb 5 місяців тому +3

    Poor snakes. No sonic hedgehog, no limbs

  • @CzechNeight
    @CzechNeight 5 місяців тому +2

    I've been waiting 20 years for this video! I've been waiting for someone to unpack the oversimplification of oopsies. As someone who is not focused on biology, it was still intuitive that mutations and natural selection were not enough to see the accelerating explosion of diversity of life. If DNA copy errors were the whole mechanism, why is it that we were single celled for billions of years, but then all mammals evolve in 200 million years. I see now that it is indeed just 'oopsies all the way down', but it's oopsies at different levels of duplication, and that a gene level duplication oopsie gives the 'problem child' gene time to find its real passion in life. And you allude to some amount of a larger library of genes available over time, which I thought might be part of it. Thank you for more clearly telling this story!

    • @Nanorooms
      @Nanorooms  5 місяців тому +1

      If I may ask, what background do you come from?

  • @hiryu70
    @hiryu70 5 місяців тому +9

    Title: its not just mutation
    Video: it's just mutation

    • @lastchance8142
      @lastchance8142 5 місяців тому +3

      THANK YOU! I guess nobody else noticed.

    • @szymonbaranowski8184
      @szymonbaranowski8184 5 місяців тому

      it's random divergence but also memory of organisms of variations that didn't work and it's not in DNA kek

  • @sol-splendet
    @sol-splendet 5 місяців тому +2

    man this is straight up gold. The animation and the commentary are top notch, keep it up my guy :)

  • @1Cr0w
    @1Cr0w 5 місяців тому +2

    "It's not just mutation" Look inside. It's just mutation.

  • @GeoffryGifari
    @GeoffryGifari 5 місяців тому +3

    How can the DNA copier "know" what the right DNA sequence is? shouldn't there be a reference?

    • @cryptoam177
      @cryptoam177 5 місяців тому +8

      The reference strand is the other complementary strand. When the DNA synthase enzyme (the copier) is creating the "copy" strand, it uses the complementary template strand to match the correct bases to form said copy strand. Of course, errors can happen due to a bunch of various factors(such as just accidentally use the wrong base, damage to bases causing them to appear chemically similar to other bases, bases in the complementary strand not "shown" to the enzyme due to kinks(DNA is a physical molecule that can bend and twist), and many other factors).

    • @Gelatinocyte2
      @Gelatinocyte2 5 місяців тому +2

      DNA replication is really just like solving the simplest jigsaw puzzle - each base can only fit/pair with its complementary base; but reality is never perfect, that's why mutations still occur despite this fact.

  • @wpwscience4027
    @wpwscience4027 5 місяців тому

    Also worth noting that fitness itself is not a uniform cull. You have quite literally as many different advantageous trajectories as you can fit under the sun.

  • @deepskyfrontier
    @deepskyfrontier 2 місяці тому

    The YT algorithm has been holding out on me. Instant subscribe. Your channel is going to explode.

  • @gregorysagegreene
    @gregorysagegreene 5 місяців тому

    I've been exploring a number of areas of biology, and become familiar with a lot. But this is a new and intriguing area for me, that I'm not able to fully grasp yet, and definitely want to delve further into.

  • @sliverlining6279
    @sliverlining6279 4 місяці тому

    this is so cool, Please provide more interdisciplinary science popularization

  • @adriaancanter4573
    @adriaancanter4573 5 місяців тому +1

    I've read that Drosophila experiments show that they evolve to adapt to heat stress faster than what can be explained by random mutation alone. I've never understood if that's really true or how. If true would the mechanisms you've described account for such an observation?

    • @ThatSpazamataz
      @ThatSpazamataz 5 місяців тому +5

      It’s possible that these are the result of epigenetic changes. I’d have to see the study you are talking about to confirm it though.
      It’s also the case that mutation isn’t always random. Gene transfer can be directed just as we humans can make GMO’s so can some organisms in some conditions edit their own or other organisms genes. (Viruses are the most obvious example of this, but CRISPR is the best example). So this could’ve another possibility.

  • @MichaelVelasquez-dx5mr
    @MichaelVelasquez-dx5mr 4 місяці тому

    “ you are a project of a fortunate series of mistakes over billions of years… so don’t be a afraid to make them “
    - Sage

  • @user-nd7rg5er5g
    @user-nd7rg5er5g 5 місяців тому +1

    Completely fascinating and wonderful work. Thank you for teaching us in such clear and fantastic ways!

  • @KWifler
    @KWifler 5 місяців тому +3

    This may blow your mind, but, actually, evolution affects EVERY system that depends on biological organisms, including nonbiological things like youtube videos!

  • @omargoodman2999
    @omargoodman2999 5 місяців тому

    Heh, snakes are coded in Python.
    On an unrelated note, I recall seeing a study a few months ago regarding how ADHD, or at least sub-threshold traits of ADHD, could be an evolutionary advantage, _particularly_ in more social organisms.
    In short, they had participants play a game simulating gathering food. They would forage berries from bushes and had to choose between continuing on their current bush, or traveling in search of another. As they gathered the current bush, it would gradually produce less food from over-foraging until it ran out. But traveling took a random amount of time to find another suitable bush. And they competed to see who could gather the most food.
    Participants who had been diagnosed with, suspected they had, or exhibited traits of, ADHD showed a significant tendency to travel in search of a new bush before the current one was depleted. Others tended to harvest to depletion or, at least, significantly reduced returns before searching for a new bush. And the "early travelers" ended up gathering more food, on average, and *not* by a small margin either. Iirc, it was something on the order of +10-15% or so. That ADHD urge to be distracted by "something new" and not get stuck on something boring ended up being a survival advantage.
    And the researchers hypothesized this is why seemingly detrimental traits can persist and be so prevelant when one would think it would be selected against if it were such an impediment. The answer is that whether it's an advantage or disadvantage can depend on environment and context. What *used* to be a survival advantage stayed exactly the same, but Human society changed, evolved, and developed _around_ it. As resources became abundant through agriculture and economy, the advantage such ADHD traits had to offer were no longer advantages; they were more detrimental and only had niche uses for people who had very robust support networks.

  • @real_pattern
    @real_pattern 5 місяців тому +2

    evolution is more often a satisficer instead of an optimizer.

  • @cyberbiosecurity
    @cyberbiosecurity 5 місяців тому +2

    Amazing video, thank you

  • @melody3741
    @melody3741 5 місяців тому

    Also laypeople to my knowledge understand “mutation” to mean duplication, mutation itself, from copying or damage, and deletion. Its not an assumption that only mutation was involved

  • @melody3741
    @melody3741 5 місяців тому +1

    OK, I absolutely must know what snakes leftover leg architecture looks like, please somebody fix those jeans in an actual snake. I have to know.

    • @Angelmou
      @Angelmou 5 місяців тому

      there are snakes with leg atavism. Just google for snake leg atavism.

  • @mapnzap
    @mapnzap 5 місяців тому +1

    Origin of Life question. With all of the diversity of DNA on the planet, is it possible to figure out if life started once in one location or multiple times in multiple locations?

    • @andrewliu6592
      @andrewliu6592 5 місяців тому +3

      well there's a LUCA (last universal common ancestor), which has an estimated time, but you can't really estimate a geographical area because much of the rock from that time period doesn't exist anymore

  • @frankpower97
    @frankpower97 5 місяців тому +1

    so doing the mice experiment in reverse can we have a snake with legs ? like a really venomous snake with really fast legs, I would like that

    • @mario97br
      @mario97br 5 місяців тому +1

      A monitor lizard from hell xD

    • @Gelatinocyte2
      @Gelatinocyte2 5 місяців тому

      _"I would like that"_
      I don't think any of us would too lol

    • @frankpower97
      @frankpower97 5 місяців тому

      How can you not like it ?
      Think just a minute !
      It's not just a venomous animal enhanced , NO!
      It is the symbol of human hubris, it is an act of power against every law of nature, it is a spit in the face of evolution, no even more, IT IS A SPIT IN THE FACE OF GOD HIMSELF!
      And what ending better than to die to the most toxic venom from a creature even more dangerous and fast of what nature could come up with ? After the accomplishment of such creation, the majesty of our actions, life would be just dull and empty anyway

  • @floweytheflower5261
    @floweytheflower5261 5 місяців тому +3

    SONIC HEDGEHOG

  • @omenow
    @omenow 5 місяців тому +6

    3:50

  • @vinniepeterss
    @vinniepeterss 5 місяців тому +2

    awesome video mate!

  • @bentationfunkiloglio
    @bentationfunkiloglio 5 місяців тому

    I've written genetic algorithms (just to experiment/play with them). To-date, I've only used single point crossover when creating a child from 2 parents. Might need to try some more sophisticated approaches.

  • @gregorydriscoll8806
    @gregorydriscoll8806 5 місяців тому +1

    Do we know why diversity is selected for? In other words, what caused the push for the mechanisms of diversity (like meiosis) to come to be? Was it for the health of the organism, or for the health of life itself, if you know what I mean?

    • @calibandrive7487
      @calibandrive7487 5 місяців тому +3

      One kind of pressure (one of many) that pushes organisms toward diversification is the pressure exerted by infectious diseases and parasites.
      Let's say you are vulnerable to a particular virus, because that virus exploits a particular surface protein on your cells to break and enter into them and eat you. In other words, you have a vulnerability, and the virus exploits that vulnerability.
      Now, if all your offspring were exact genetic copies of you, then they would all inherit the exact same vulnerability, and the virus would spread rapidly among your offspring and eat them.
      But if you were able to give your offspring different variants of that surface protein, perhaps some of your children would be more or less resistant to the virus and would have a better chance to survive and outbreak of virus.
      One way to achieve genetic diversity in your offspring is sex; instead of cloning yourself to make babies, you team up with another individual who is genetically distinct from you. You and your partner then shuffle your genes together to make wholly unique babies that are neither identical to you nor to your partner. This is a useful way to hedge against homogeneity and resist diseases and parasites.
      "Don't put all your eggs in the same basket" is the same principle as "give your offspring lots of genetic diversity".

    • @ThatSpazamataz
      @ThatSpazamataz 5 місяців тому +1

      Other reasons are that diversity allows for faster adaptability to changing conditions. Which is evolutionarily advantageous if a new niche appears or if the environment changes drastically. (For example if you have 5 offspring it may mathematically make more sense to make 4 that are ideal for the environment and 1 that is ideal for a slightly different environment. Yes the one that is not ideal likely will have a lower fitness if the environment stays the same. But the fitness cost vs the potential reward if the environment changes may be worth it (a bit like paying for a lottery ticket).
      I just made up the 4/5 ratio but similar things can be more evolutionarily stable.
      Another reason is behaviour. The selfish gene is a really good book for understanding this concept. But essentially behaviour patterns across species can be considered from a game theory perspective. And in cases like that if every animal lets say shares their food with each other. Then if your genes promote that you have more diverse offspring, statistically your offspring will be more likely to be able to evolve to not share and then take advantage of the other animals in your species. And then this goes even further than when your offspring start dominating the gene pool, they will also be more likely to have offspring which evolve to stop sharing with the animals that steal etc etc etc.
      Effectively being able to quickly evolve is in itself evolutionarily advantageous. Because even if it means more of your offspring won’t be perfect for the niche and therefore the individuals will be slightly worse off, it (as the previous person wrote) hedges a bet that prevents a situation where the ecological niche changes and your previous perfection is now a big problem that (due to not favouring diversity) cannot be changed quickly enough before your genes die out.

  • @lopsidedpolygon
    @lopsidedpolygon 5 місяців тому +27

    LMAO sonic as the final form 😂

    • @cyberbiosecurity
      @cyberbiosecurity 5 місяців тому +12

      there is a gene that is literally called that. We also have Robotnik gene 😁

    • @Gelatinocyte2
      @Gelatinocyte2 5 місяців тому +10

      @@cyberbiosecurity It's not a Robitnik gene, it's Robotnikinin - a chemical developed to interact with Sonic Hedgehog proteins (you know, for research!)
      -There's also a Shadow Hedgehog gene if anyone's interested.-
      Edit: I somehow had a false memory of there being a "shadow hedgehog gene"; there wasn't (I think). How did I misremember this?

    • @raptorboss6688
      @raptorboss6688 5 місяців тому +1

      @@Gelatinocyte2lmaooo whoever decided to name these genes after sonic characters is literally the best person ever

    • @cyberbiosecurity
      @cyberbiosecurity 5 місяців тому +1

      @@raptorboss6688 it was related to some flies develooping spikes on their back dependent on this gene. hence hedgehog

    • @cyberbiosecurity
      @cyberbiosecurity 5 місяців тому

      @@Gelatinocyte2 it's called cryptomnesia, afair.

  • @stasglazkov8734
    @stasglazkov8734 5 місяців тому

    "You understanding of evolution is incomplete. Here is why: "
    Its not. -----> I'm a certified genius.

  • @psi9899
    @psi9899 5 місяців тому

    Thank you for the great video! This is also why transposons and integrated viral elements in the genome are also drivers of trait evolution!

    • @Nanorooms
      @Nanorooms  5 місяців тому +1

      Indeed! A little sad that I couldn’t manage to find a place to fit it in this video without overblowing the complexity.

  • @perguto
    @perguto 4 місяці тому

    2:22 how does that "proofreader" know which strand is the original?

  • @michaelscheibe4228
    @michaelscheibe4228 5 місяців тому

    The Videos are a good source for modeling protein dynamics/regulation in cells and between them. I have bought the book "An Inteoduction to Systems Biology" (2. Edition), but I'm at the beginning & the real interest i am about to is modeling the evolving of DNA & RNA.

  • @rasiklal8016
    @rasiklal8016 5 місяців тому

    One of the BEST explanations on youtube - THANKS

  • @dragonzed
    @dragonzed 5 місяців тому

    Just stumbled across your channel as a recommendation. I liked it! Explaining evolution is hard! But please be careful when oversimplifying things. For example, isn't it really bad to even suggest that c.elegans evolves into the fruit fly? One should just say that they it is posible that they have a common ancestor. No spiecies that is alive right now can evolve into another species, right? RIGHT?

  • @gregoryallen0001
    @gregoryallen0001 5 місяців тому +1

    @nanorooms you have a very good subs/views ratio

  • @noelbreitenbach8673
    @noelbreitenbach8673 5 місяців тому +1

    Gosh darn I love this stuff!

  • @100daysummer
    @100daysummer 5 місяців тому

    Excellent animation and editing, love to see it!

  • @manuelpena3988
    @manuelpena3988 5 місяців тому +1

    It's funny that you use an optimization algorith based on.... natural selection, to give an intuitive explanation of how natura selection works. It's just like a genetic algorithm!
    (btw thank you for the video, love your videos and, most of all, your subject)

    • @Nanorooms
      @Nanorooms  5 місяців тому +1

      -trust the natural definition recursion-

  • @iquemedia
    @iquemedia 5 місяців тому +1

    what a fantastic line to end on
    idr why I subbed, but it probably has to do with the fact I haven't thought about how genes in years
    keep makin mistakes homie, I'll hear ya at the next one 🤙

  • @mrv4747
    @mrv4747 5 місяців тому

    This is golden content!

  • @KillianTwew
    @KillianTwew 5 місяців тому

    Could you hijack a duplication event to sort of seed it to develop a trait you want, or could you just code and insert said trait?

    • @davidaugustofc2574
      @davidaugustofc2574 5 місяців тому

      Some viruses just insert DNA into the cells.

    • @someguy999
      @someguy999 5 місяців тому +1

      Duplication events are random and rare, so it probably wouldn't make sense to try and hijack one. It would make more sense just to use a gene editing technology like CRISPR to do what you are describing.

  • @mikiimiki9182
    @mikiimiki9182 5 місяців тому +1

    Wasnt interchromosomal recombination in anaphase 1?

    • @Nanorooms
      @Nanorooms  5 місяців тому +3

      The linking already occurs in prophase I, since these homologous chromosomes needed to be joined together to be brought to the centre. The holliday junction resolution only happens during metaphase I or anaphase I, If I recall correctly.

  • @nescaufe1991
    @nescaufe1991 5 місяців тому +1

    Why is the leg expression gene named “Sonic Hedgehog”?

    • @andrewliu6592
      @andrewliu6592 5 місяців тому +2

      one of the discoverers saw an ad for the game sonic in a magazine and decided "hmm that sounds like a good name for a protein"

    • @Angelmou
      @Angelmou 5 місяців тому +3

      Scientists are Nerds.

    • @asphalthedgehog6580
      @asphalthedgehog6580 5 місяців тому

      Wish I had that name...

  • @Gutterrat69
    @Gutterrat69 5 місяців тому

    Thankyou this was very helpful and cleared up my misconception

  • @ahmetmutlu348
    @ahmetmutlu348 5 місяців тому +1

    I suspect that viruses microphages etc are part of evolutions master program and transfer data offline where data is not accessuble the standard way.. i mean it has random access data read write capabilities which means out of main software data update which is something you do on cheat engine to update games rules on pcs ;)

  • @vinniepeterss
    @vinniepeterss 5 місяців тому +1

    love this as always!

  • @alanbregovic8889
    @alanbregovic8889 5 місяців тому

    my garden could use a cute stripey snake with big eyelashes

  • @michaeljames5936
    @michaeljames5936 5 місяців тому

    Why so many of these 'genius' Multi-Billionaires, come from incredible wealth already, is because they have that 'safety net', which allows them to innovate safely.. and hey go bankrupt a few times. If you are struggling to put food on the table, the courage to take out a loan to finance your big idea- if you could get one, is a lot harder to come by when your car and home are on the line.

  • @robertomancusi7929
    @robertomancusi7929 5 місяців тому

    This video is amazing! Keep it up

  • @edhernandez4344
    @edhernandez4344 5 місяців тому +1

    It's crazy to think all life on earth came from a single common ancestor. it's like this ancestor already had the blueprints for everything that would come to exist on this planet with the materials it could find, practically being shaped by it's surroundings, slowly adapting over eons to the environment it spawned into to have more and more sensory feel of the world around it. Also creating tools and pieces of bigger organisms completely separate from each other that would later merge. If that doesn't prove the existence of God, I don't know what will. It's just an ever growing paradigm of ways to feel and perceive the world.
    On a side note, I have really been wondering how a tree perceives the world, any plant for that matter.

    • @Angelmou
      @Angelmou 5 місяців тому +1

      The problem with that approach is however while it is compatible with a deity belief, this deity is like the gnostic demiurge not any benevolent being especially not an allloving fatherfigure in most religions wanting a relationship with humans in particular, as it is build on a gigantic mountain of a high deathtoll with trillions over trillions of suffering and dead critters even each year (if you imagine that alone the number of ants on the world is estimated to be 20 quadrillion).

    • @notionSlave
      @notionSlave 5 місяців тому

      @@Angelmou pretty sure the bible is saying God is testing us.

    • @Angelmou
      @Angelmou 5 місяців тому +1

      @@notionSlave It also says that God smashes the skulls of seamonsters and that he did wrestle in combat with jacob and did lose the fight, despite of using dirty tricks like hitting him at the lower body parts or that on various occations God there liked the smell of burning animals. I meant the cutesy wootsy interpretation of loving father figure, not the "I'm the great male baboon tribe chief" text intent of the authors struggling with bronze age empires.

    • @davidaugustofc2574
      @davidaugustofc2574 5 місяців тому

      You were in the right train of thought, just missed the conclusion. This doesn't prove the need for a creator, the fact is that nothing can prove. Probably will never be proven.

    • @SteveLomas-k6k
      @SteveLomas-k6k 5 місяців тому

      Some evolutionary biologists have made this argument to account for the improbability of lucky mutations- that the necessary code is somehow present in the first replicators- perhaps in highly compressed form.
      I've heard this made as a secular/materialist argument against the need for creative input. But it obviously begs the question of where this information came from.

  • @varshneydevansh
    @varshneydevansh 5 місяців тому

    Can't remember when I subbed you but it's worthy

  • @paolocarl.8205
    @paolocarl.8205 5 місяців тому

    All I could think throughout the video is that I want to see a python with legs now, since it's possible

  • @zamolxezamolxe8131
    @zamolxezamolxe8131 5 місяців тому

    When i take a bath, i feel sometimes like a bactrria floating in water

  • @calebr7199
    @calebr7199 5 місяців тому

    Another great video from one of my favorite science youtubers!

  • @Jolfgard
    @Jolfgard 5 місяців тому

    I'd be damned if epigenetics would modulate gene transfer to some degree.
    Considering that I am notoriously bad at comprehending anything that has any relation to biology whatsoever, you can rest assured that there is no direct relationship between gene expression of the parent and gene transfer to the child. Every intuition and hunch I've ever had about biology has always been hilariously wrong.

  • @andrewgu2318
    @andrewgu2318 5 місяців тому +2

    Wow im here early. I love your content man.

  • @florinteleanu9049
    @florinteleanu9049 5 місяців тому +4

    Amazing syncronization with Veritassium's newest video on adaptation of duplicated genes in jumping spyders retina

    • @Nanorooms
      @Nanorooms  5 місяців тому +4

      I just watched it and laughed at how well it coincided 😂

  • @yeethappymeta
    @yeethappymeta 5 місяців тому

    i love this video so much!!! I can only wish to become such a great scientific educator as yourself.

  • @cyberbiosecurity
    @cyberbiosecurity 5 місяців тому +1

    In healthy human body, on average, approx. 1 DNA error occurs every second.
    Given ~50 trillion cells in our body, roughly(and wrongly) speaking this makes up for 50 THz error rate per whole body.
    (wrongly, because in fact we can not apply "Hz" to denoting stochastic processes average frequency)
    still just imagine that NOISE, like an insane Geiger counter cracking. 🥶 like 500 dB noise

  • @derex47
    @derex47 5 місяців тому

    Your videos are like sunlight after a stormy day

  • @sshreddderr9409
    @sshreddderr9409 5 місяців тому +1

    your understanding of evolution is also incomplete. many people do not understand that evolution rate is a logarithmic curve that approaches an equilibrium state quite fast, and the only point to get past that are mass extinctions caused by catastrophes or sudden, severe changes in environmental conditions. evolution is rapid when resources are abundant and many niches are left to fill and to specialize in, but stagnates when all of them are filled and optimized for. changing conditions alone caused only minor adaptations, to get any significant change, the animals that fill the ecological niches have to mostly die all off, otherwise there is no way any significant evolution can occur.
    also, hybridization is also allows for gene flow between surprisingly different animals, even those with a different number of chromosomes, and while 2 hybrids will not be fertile, a hybrid can still produce fertile offspring with one of its parent species, and after enough reproductive cycles, those hybrids with a reduced foreign gene content can themselves be similar enough to to reproduce within themselves, meaning that gene flow between species that can not produce fertile offspring is still very possible

  • @kaushalgagan6723
    @kaushalgagan6723 5 місяців тому

    This is the video I was waiting for ❤
    Best explanation as always

  • @deleted_handle
    @deleted_handle 5 місяців тому

    every time the screen darkens I think my battery went low.

  • @thesimplicitylifestyle
    @thesimplicitylifestyle 5 місяців тому

    What happens when the software starts intentionally changing its own hardware? 😎🤖

  • @oatlord
    @oatlord 5 місяців тому +1

    So, are there legit labs out there making custom animals now?

    • @Angelmou
      @Angelmou 5 місяців тому +1

      Labs test at the current time to fill broken parts in to crosscheck - birds for example are dinosaur variations coming originally from archosaurians, still having the gene structures for the sauropsid teeth, but they are missing the parts to grow them due to their beak selection. So labs filled the parts again from the crocodile teeth genome as crocodilomorphs are just like birds modern archosaur descendants more closely related to birds and the bird embryos did regrow saurian teeth in that matter. In hypothesis it may be possible to debreed birds to theropod dinosaurs, but they would not be identical to them as many errors are not easily to be undone or where we do not have the orignal DNA as comparison material. It would also cost way to much without any commercial relevance.

    • @someguy999
      @someguy999 5 місяців тому +1

      We've been mutating animals in the lab for a century now! If you mean cute and fuzzy animals, rather than fruit flies, we've still been doing mutagenesis experiments for decades. The first gene editing in mice was done in 1974!

    • @Crembaw
      @Crembaw 5 місяців тому

      Yes they’re called farms.

  • @bhangrafan4480
    @bhangrafan4480 5 місяців тому

    Who wrote this video and what qualifications do they have to write it? Why is there no author credit?

  • @elizabethwinsor-strumpetqueen
    @elizabethwinsor-strumpetqueen 4 місяці тому

    Michael Levin is WAYYY ahead of you !

  • @atreidesson
    @atreidesson 5 місяців тому

    You advertise Brilliant. I'm generally positive towards subscribing to it, BUT they always show such basic examples of tasks that never have I not known how to approach any one of them or visualize the visualisations in my head. And to be fair, this does constitute a lack of real task examples.

  • @oatlord
    @oatlord 5 місяців тому

    How do these copying cells do error detection?

    • @someguy999
      @someguy999 5 місяців тому

      There a number of mechanisms, but templates come into play a lot of the time. By template, I'm referring to the opposite DNA strand. There are also mechanisms that don't rely on templates, but they are more error prone.

  • @DeadJDona
    @DeadJDona 5 місяців тому

    5:55 five kilos of external bacterias in your body are highly optimised to live in you

  • @Clockworkbio
    @Clockworkbio 5 місяців тому +1

    LETS GOOOOOOOOOOOOOO

    • @Nanorooms
      @Nanorooms  5 місяців тому

      Big fan of your work too!

    • @Clockworkbio
      @Clockworkbio 5 місяців тому

      @@Nanorooms That really means a lot on my end! Nothing but respect for folks who can illuminate the math concepts in bio! Always hamstrung me in my studies.

  • @CRUISEWITHSPIRIT
    @CRUISEWITHSPIRIT 5 місяців тому

    There’s no escape option

  • @TEPMOBETEP
    @TEPMOBETEP 5 місяців тому

    Mechanisms and all is interesting, but how is that started though? You explained how DNA can grow in lenght, but from where that mechanism of biology programing originated?

    • @andrewliu6592
      @andrewliu6592 5 місяців тому +3

      the DNA polymerization reaction can be catalyzed by rna molecules. also, some minerals have been found to be able to catalyze the assembly of nucleic acids & proteins

    • @TEPMOBETEP
      @TEPMOBETEP 5 місяців тому

      ​​@@andrewliu6592 source? Because you are not answering my question, or i am not getting it. "Catalyze the assembly" but proteins assembled only by other proteins/enzymes with subsequent decoding of existing DNA.
      Plus, RNA is huge molecule and don't "just happen" in some wild mineral soup.

    • @davidaugustofc2574
      @davidaugustofc2574 5 місяців тому

      ​@@TEPMOBETEP why not look at how the experiment is done instead of clinging on to outdated beliefs

    • @SteveLomas-k6k
      @SteveLomas-k6k 5 місяців тому +1

      @@TEPMOBETEP It's still a mystery- even the spontaneous creation of the DNA molecule itself is not understood- only small parts of it- and even then highly speculative.
      Beyond that that though, it's like using geology to explain the Rosetta Stone; even if you can account for the medium, you're not accounting for the 'programming' as you say, the actual necessary information, digital in this case.

    • @TEPMOBETEP
      @TEPMOBETEP 5 місяців тому

      @@davidaugustofc2574 what experiment? I asked for source of the first claim. You are mentioning now about some "experiment". What is your source also? Where can i learn about "experiment" you mentioned? You are answering with some vague gibberish. What is your source? Study? Experiment name? If you want to answer questions, then provide source. If don't want to point the source out, don't answer

  • @peters972
    @peters972 5 місяців тому +1

    There is also epigenetics to think about though.

    • @Gelatinocyte2
      @Gelatinocyte2 5 місяців тому

      Not "though", but "too".

    • @peters972
      @peters972 5 місяців тому

      @@Gelatinocyte2 nope :-)

    • @Gelatinocyte2
      @Gelatinocyte2 5 місяців тому +1

      @@peters972 I mean epigenetics adds to the layer of evolutionary complexity, it doesn't contradict it.

  • @CppExpedition
    @CppExpedition 5 місяців тому

    Interesting and subscribed❤

  • @ramanShariati
    @ramanShariati 5 місяців тому

    Please make a video on bioeleciy an morphogenesis

  • @harutixohanoc5658
    @harutixohanoc5658 5 місяців тому +5

    I understand less now💀

  • @egohicsum
    @egohicsum 5 місяців тому

    great video ❤️

  • @williamkibler592
    @williamkibler592 5 місяців тому

    Good numbers brah

  • @narrativeless404
    @narrativeless404 3 місяці тому

    Nah, *Sonic Hedgehog* is wild 😂

  • @DineshGaikwad
    @DineshGaikwad 5 місяців тому

    So does this mean that the molecules can think for themselves? So they have their own brain? How is this even real? What is happening here?

    • @Angelmou
      @Angelmou 5 місяців тому +2

      No isn't meant by that.

  • @snickeringpopcorn
    @snickeringpopcorn 5 місяців тому

    the mitochondria is the power house of the cell