Single Cell Sequencing - Eric Chow (UCSF)

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  • Опубліковано 3 січ 2025

КОМЕНТАРІ • 71

  • @Keigan884
    @Keigan884 3 роки тому +88

    Please get Eric to do more of these videos, this is by far the best overview, and easiest to understand, that I’ve found. He’s so good at actually explaining in a way that is not overly technical on purpose. I feel that many in the field are gatekeeping their knowledge, instead of explaining in ways that others can understand.

    • @12823matthewkao
      @12823matthewkao 2 роки тому +1

      right....i feel researchers nowadays are reluctant to teach students technical skills and overly focusing on theory and critical thinking....thats why they need to import tons of post docs from china and India because American student are lacking technical skills!! this is really messed up!

    • @francescoprevedello8658
      @francescoprevedello8658 5 місяців тому

      I think like its more that most people on the field dont actually know that well how every aspect of ngs work, since it is a process that involves tons of different expertise, and each one learn well mostly what they need to know.
      The flow process to obtain a diagnosis from a sample boood requires several different experts in chemistry, phisiscs, biology, biotechnology, medicine, engineering, bioinformatics, therefore it is difficult to find someone who actually has the knowledge to perform a well explained overview of the process.
      That is why the prof. In the video is so talented

  • @anastasiapivnyuk6985
    @anastasiapivnyuk6985 3 роки тому +17

    Really cool! Thank you Dr. Chow for this detailed and at the same time clearly structured talk!

  • @BasicScienceSeries
    @BasicScienceSeries 4 роки тому +7

    Thank you Dr. Eric for this wonderful talk. You have provided detailed information on Single Cell Sequencing and explained every detail of this technique. I found the lecture valuable and highly informative. Thank you very much iBiology Techniques for providing this valuable lecture.

  • @je11y_jju
    @je11y_jju 3 місяці тому

    Thank you so much for this introduction of sc-RNA Seq. This video helps me a lot to understand each steps even though I didn't have much of understanding about this field. Thank you again.

  • @codewithluq
    @codewithluq 2 роки тому +1

    This lecture is highly informative and greatly valuable. It has cleared most of my gray areas in the field of single cell analysis

  • @merrimac1
    @merrimac1 3 роки тому +7

    Thank you for the nice introduction of single cell sequencing methods!

  • @jordanramilowski9413
    @jordanramilowski9413 4 роки тому +1

    You look for something on UA-cam. The video with Eric Chow pops up. You know its gonna be good...

  • @karimali5850
    @karimali5850 2 роки тому +1

    One of the best scSeq overviews out there. Keep it up you're doing great!

  • @captainquinine
    @captainquinine Рік тому +1

    Excellent talk

  • @esan120au
    @esan120au 8 місяців тому +1

    17:13 quantifying proteins using DNA sequencing (CITE-Seq)
    21:26 universal antibodies for a universal cell-surface protein that have unique barcodes for each cell to detect the unwanted doublets (droplet with one bead but two cells)

  • @meenukesarwani8665
    @meenukesarwani8665 3 роки тому +1

    Dr Chow I love your videos. Please continue your good work. Its really thorough and well explained with theory behind each technique which are not explained from the product maker /companies.
    Thank You!

  • @catherinegrgicak9570
    @catherinegrgicak9570 Рік тому

    Great presentation! Just great! I agree with all of the other positive comments. The content is great, easy to follow and Eric is a great presenter.

  • @samanwoymukherjee4945
    @samanwoymukherjee4945 4 роки тому +1

    Excellent talk and lucid explanation of the biology Dr. Chow. Thanks iBiology, looking forward for such talks in future.

  • @anjadekanski3879
    @anjadekanski3879 3 роки тому +6

    These sequencing videos are really great! I hope you can also cover UMIs, spatial transcriptomics, and other such difficult concepts :)

  • @marcuslcc5257
    @marcuslcc5257 4 роки тому +2

    Extemely helpful for newbies!!! Thank you Dr. Chow!!!

  • @bhartithakur2748
    @bhartithakur2748 2 роки тому

    Thanks for this amazing video Dr Chow

  • @AliRazaShahSARSB
    @AliRazaShahSARSB 3 роки тому +1

    Thank you, It was really good to understand the basics of single cell sequencing methods.

  • @qutemango
    @qutemango 2 роки тому

    thank you for explaining these technologies so clearly!
    it's very useful for me.

  • @mistarelentless5722
    @mistarelentless5722 4 роки тому +1

    Dr. Chow you is da G.O.A.T. grateful!

  • @rainajung185
    @rainajung185 2 роки тому

    Love Eric’s videos so easy to understand!

  • @beckysam3913
    @beckysam3913 3 роки тому +2

    Thank you for this coherent and excellent introduction!

  • @여가뮤직프로듀싱
    @여가뮤직프로듀싱 3 роки тому

    Thank you so much for this lovely talk. I think this is the best talk summarizing scRNAseq.

  • @aatt3209
    @aatt3209 4 роки тому

    Excellent overview summarizing development up to 2019 in this developing field. Thank you for your hard work putting this presentation together!!

  • @valentynapolishchuk1123
    @valentynapolishchuk1123 2 роки тому

    Great video, thank you! Very informative and easy to understand!

  • @kaiqin5306
    @kaiqin5306 2 роки тому

    wonderful lecture

  • @panther25423
    @panther25423 Рік тому

    Fantastic video.

  • @jessicalv6442
    @jessicalv6442 2 місяці тому

    Thank you so much!

  • @gonzalovillanuevamartin9807
    @gonzalovillanuevamartin9807 3 роки тому +1

    Amazing video, amazing explication. Thank you Dr. Chow!

  • @gnosisdataanalysis8595
    @gnosisdataanalysis8595 4 роки тому +1

    Bravo! Great video. Single Cell - clearly expained!

  • @deeptimittal4552
    @deeptimittal4552 5 місяців тому

    Nice introduction. Kudos

  • @deepikachaudhary-ge5cj
    @deepikachaudhary-ge5cj Рік тому

    nicely explained....

  • @AA-gl1dr
    @AA-gl1dr 2 роки тому

    Excellent explanation thank you so much!!

  • @ye2e2
    @ye2e2 3 роки тому

    Thanks for the insightful sharing.

  • @vikas3141
    @vikas3141 4 роки тому +1

    well mam from last few weeks ,I am focusing on biochemistry portion ,althrough I read all content of book but I'm not satisfied with that content , can you please answer or make vedio on my following queries:
    (1) in lab whenever we isolate some compound and want know the structure of compound ,how do we really formulate them , what are those techniques , are these techniques 100%accurate or just give approx idea
    For example , I always wonder how scientist who has first isolated ATP molecule , how he give structure of ATP , infact how he isolate compound at level of molecule, (since i have isolate compound at level dna only) how cycle such as kreb cycle or glycolysis are performed in lab
    Your entire vedio lecture have always motivated me , thanks a lot
    I am from india

  • @esan120au
    @esan120au 8 місяців тому

    Thanks. Can you clarify at 8:04 when you said each beads has many barcoded oligo-dT oligos on its surface. What is the scale of this "many"? Millions? Are these supposed to attach to the entire transcriptome of a cell?

  • @a3m9b
    @a3m9b 4 роки тому

    Thanks for the explanation! Very helpful for my course

  • @kabriyacharlest9018
    @kabriyacharlest9018 3 роки тому +1

    Thank you Dr. Chow for that! That was explain so well, so much detail but you explained it in a way that was so easy to understand this! Such a great presentation!

  • @lovelysmart97
    @lovelysmart97 Рік тому

    Thx for watching!

  • @JoseAntonioOU4
    @JoseAntonioOU4 3 роки тому

    Thank you for the lecture. I need to go back to school. It would have been useful to include costs/instruments

  • @azrahasan3796
    @azrahasan3796 Рік тому

    Great video.
    I got a question, In demuxlet. If you are working with different individuals, the possibility of two different cell types from same individual is not that rare. How they differentiated the cell population from same patients.

  • @disturbingdevelopment4308
    @disturbingdevelopment4308 Рік тому

    Why can't the doublet microparticles be distinguished from singletons using light scattering or fluorophore techniques?

  • @OsamaElghawil
    @OsamaElghawil 9 місяців тому

    I looking for good videos in how analyzing the a dataset of Peripheral Blood Mononuclear Cells (PBMC) ?? Thank you

  • @qsc9546
    @qsc9546 3 роки тому +1

    What's the overall accuracy of Seurat and Scanpy? Is that significant?

  • @sarowerbhuyain4905
    @sarowerbhuyain4905 3 роки тому

    Just splendid!!

  • @extropiantranshuman
    @extropiantranshuman 4 роки тому

    not one dislike - exactly! Love data visualized in a 3D space!

  • @tigerkeys6406
    @tigerkeys6406 3 роки тому

    Really cool what is the tool you use to record this video that you can embed into the video?

  • @qsc9546
    @qsc9546 3 роки тому

    How's performance of supervised methods? Any pitfall?

  • @qsc9546
    @qsc9546 3 роки тому

    What is the influence of clustering on downstream analysis? Differential expressed gene?

  • @search_is_mouse
    @search_is_mouse 3 роки тому +1

    thank you!!!!!!!SO MUCH!!!!

  • @qsc9546
    @qsc9546 3 роки тому

    Is clustering the bottleneck of scRNA-Seq or the doublelets. Does 0.6 clustering accuracy mean 0.4 doublelets?

  • @ishapandey28
    @ishapandey28 4 роки тому

    Can you please explain what microfluidic is?

  • @SanchoColins
    @SanchoColins 3 роки тому

    Brilliant.

  • @HuongLe-li2wy
    @HuongLe-li2wy 3 роки тому

    Some segments in the video are stamped not adjacent to each other

  • @onefuture6
    @onefuture6 3 роки тому

    I love your voice.

  • @ayitm
    @ayitm Рік тому

    I'm pleasantly surprised that this video has this many views!

  • @ODjangoo
    @ODjangoo 4 роки тому

    as of 2020, approximately how long does it take to run scRNA-seq in a single sample?

    • @sofiakathiria7050
      @sofiakathiria7050 3 роки тому

      atleast 2 days

    • @ODjangoo
      @ODjangoo 3 роки тому

      @@sofiakathiria7050 thanks, someone told me 1 day and i was very skeptical :)

  • @simonsays5094
    @simonsays5094 3 роки тому

    Thank you sir this was very helpful

  • @edthoreum7625
    @edthoreum7625 Рік тому

    5:00 first cell sequencing,,,

  • @wl2007
    @wl2007 3 роки тому

    How do they know which cell type the mRNAs came from originally?

    • @ricardosantos6554
      @ricardosantos6554 2 місяці тому

      Im a bit late, but you atach a specific barcoding RNA to each cell

  • @sleepyowl910
    @sleepyowl910 3 роки тому +1

    Lost my appetite for smoothies!

  • @tiangechi1144
    @tiangechi1144 3 роки тому +1

    How sexy is his voice omg… nearly forgotten what I’m here for.

  • @vanderleidasilvafragajunio1197
    @vanderleidasilvafragajunio1197 3 роки тому

    I think I found my husband!

  • @hraqhraq
    @hraqhraq 2 роки тому

    Not a good lecture, unless you are specialized in this field; even not clear for medical students to understand what is he talking about