How to download and install Autodock Vina on Mac IOS for Plugin in UCSF Chimera

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  • Опубліковано 9 лис 2024

КОМЕНТАРІ • 76

  • @EmmaWang-g3u
    @EmmaWang-g3u 10 місяців тому +7

    for those who keep getting the error "zsh: command not found: vina" and have the security settings already set to app store and identified developers, try closing and reopening terminal then going back into bin and reentering vina, that worked for me

  • @DingChengWang-j1t
    @DingChengWang-j1t 4 місяці тому +2

    It's an absolutelty helpful video! I just changed to MacOS from windows 3days ago and need docking tool immediately. There were no useful instructions on Chinese social media and website, this is the only one which can install Autodock properly, and working perfectly with Chimera.....can't imagine how long will it takes me to manage this, thanks again!

    • @DingChengWang-j1t
      @DingChengWang-j1t 4 місяці тому

      By the way, my chip is M3MAX, this video should be work for all apple M series ARM chip, otherwise you have to use emulator

    • @Poggio68W
      @Poggio68W 4 місяці тому

      Hi! I am wondering if you were successfully able to install vina, I keep getting the zsh:command not found: vina error and can't figure out why

  • @bluequasar
    @bluequasar 11 місяців тому +2

    This is my first time commenting on a video and I wanted to say thank you for this! I was having a hard time installing with the new M2 Mac and this helped so much!

    • @sci.tech_zone
      @sci.tech_zone  11 місяців тому

      I’m glad to see your comments. Pls subscribe to the channel for more useful video and share with others

    • @SanjudaSubramaniyan
      @SanjudaSubramaniyan 5 місяців тому

      Hey, I am using M2 Mac too, and I am facing an issue. It shows "command not found" and any idea where exactly should I go in Security & Privacy?

  • @SanjudaSubramaniyan
    @SanjudaSubramaniyan 5 місяців тому +4

    I tried the above steps several times but still, when I type 'vina', it shows no command. I currently use MacBook with M2 chip and it runs on Ventura OS. What should I do to resolve this? Any idea?!

  • @ThuyDo-nd3xp
    @ThuyDo-nd3xp Рік тому +6

    can someone help me pls :(( I've tried everything. I did the same process as instructed and I got the "zsh: command not found: vina". I already verified vina and everything, and I still get "zsh: command not found: vina". I even allowed full disk access in privacy. I only can not choose to verify in disk utility. I'm using Mac BigSur 11.2. thankyou so much for your help!

  • @emmashen8852
    @emmashen8852 Рік тому +1

    wouldn't have managed without this video thanks so much! it somehow didn't work the first time and somehow worked the second time, but as long as it worked~

  • @yujie9626
    @yujie9626 6 місяців тому +1

    Thank you so much for the tutorial!! And for those stuck in the last step that shown "command not found", you can go to the System Settings>Privacy & Security> scroll to the bottom Security part>it will ask if you want to open your permit to vina, and select open anyway.

  • @mortezapanahzadeh
    @mortezapanahzadeh Рік тому +3

    Hi thank you for your great tutorial. Everything's fine with the tutorial except the last part after control x and then typing Y. After that it doesn't go back and I have to press control T. And when I type "vina in" it says command not found. I would appreciate it if you could help me out here.

    • @sci.tech_zone
      @sci.tech_zone  Рік тому +2

      Go to your Mac security and permit Mac to verify vina

    • @yinuowang3070
      @yinuowang3070 Рік тому

      @@sci.tech_zone i give vina full disk access but still show command not found

    • @curiousBPM
      @curiousBPM Рік тому

      @@sci.tech_zone How can we do that? I got no prompts when I opened the settings.

    • @gizemturan6636
      @gizemturan6636 Рік тому

      @@curiousBPM ı have same problem

    • @genzed9475
      @genzed9475 Рік тому +3

      @@curiousBPM go to system settings, privacy & security, then scroll down to where it says ""vina" was blocked from use because it is not from an identified developer." Click open anyway

  • @vclibgar5
    @vclibgar5 2 роки тому +1

    Thank you so much for your video! do you know if MAC catalina is facing some problems with VINA?

    • @sci.tech_zone
      @sci.tech_zone  2 роки тому

      what problem do you face? Let me know and i will be able to assist.

  • @nejragranulo
    @nejragranulo Рік тому +2

    Hi, is it necessary to run installation via conda, or it can be done normally just using a terminal. I am the Mac user and have some difficulties running the installation. Everything works fine until I need to type Y after command plus X. I type Y and get etc/paths and afterwards when I type vina, it says command not found. Can you maybe help me to resolve the issue?
    THX

    • @sci.tech_zone
      @sci.tech_zone  Рік тому +2

      Go to your Mac security and permit Mac to verify vina

  • @hassana29
    @hassana29 Рік тому +1

    hello, tried doing this but unfortunately it says "zsh: command not found: vina" . maybe because my os is Ventura. I read somewhere on reddit that the only way this can work is if you downgrade your macOS or you use a virtual box or just get a windows system

    • @Stevhany.Christina
      @Stevhany.Christina 11 місяців тому

      Hi, I've same as with you. What are u doing after that? Do you still can't?

  • @honruf5036
    @honruf5036 8 місяців тому

    Hi, Thanks for the video presentation, when I was on the last step, ctrl+x and then Y, I did it. At the end when I enter vina I get a command not found, I also followed your instructions and did "Go to your Mac security and permit Mac to verify vina" but there is no prompt in the settings, I've repeated it I've repeated it dozens of times, but it still doesn't work. Please help me

    • @hsaqer007
      @hsaqer007 6 місяців тому

      authorise it from privacy sittings

  • @326.mishrasahilsantosh5
    @326.mishrasahilsantosh5 Рік тому +1

    plz make video for installing autodock in Mac book m2

  • @mojamal213
    @mojamal213 2 роки тому +1

    Hello. Thanks for the video but after I press control x it does not take me out of the folder and instead says do you want to save buffer or something like that. When I press u and enter it takes me back after and then when I write vina for the last step i dont get the same info as yours meaning something I'm doing is incorrect. I followed step by step. Very frustrating.

    • @sci.tech_zone
      @sci.tech_zone  2 роки тому +1

      After pressing 'control' and 'X" you can click 'yes or Y' if it ask you if do you want to save buffer

  • @harman9073
    @harman9073 Рік тому

    Hi thank you for the great tutorial, everything works but I am still unsure how to open vina through chimera.

    • @sci.tech_zone
      @sci.tech_zone  Рік тому

      Before you open vina, Go to your Mac security and permit Mac to verify vina

  • @shaziakhan3575
    @shaziakhan3575 Рік тому

    Sir plzz make a video on how to run autodock vina in macbook after following this video for installation

  • @shaziakhan3575
    @shaziakhan3575 Рік тому +1

    After allowing mac security for vina why again come commond not found .plzz give me solution for this as soon as possible

    • @sci.tech_zone
      @sci.tech_zone  Рік тому

      I will advise you repeat the whole process from the begining

  • @kutubashraf9208
    @kutubashraf9208 Рік тому +1

    Hi I use MAC .Could kindly help me installing the autodock vina

    • @sci.tech_zone
      @sci.tech_zone  Рік тому

      Follow the instructions in the video. Let me know if u have any challenge

  • @xinyizhang4247
    @xinyizhang4247 2 роки тому +1

    Hi there! Even after following all the instructions, my Mac still says "vina" cannot be opened because the developer cannot be verified at the last step on terminal. Do you know if there is anyway to bypass that?

    • @sci.tech_zone
      @sci.tech_zone  2 роки тому

      Go to your Mac security and permit Mac to verify vina

  • @HimaMakala
    @HimaMakala 11 місяців тому +1

    Hi, Thanks a lot for sharing the content. very much useful

  • @TrangNguyen-fh2ut
    @TrangNguyen-fh2ut Рік тому +1

    I have this message : "zsh: bad CPU type in executable: vina". Can you help me to figure this out? can you also make a video on how to install MGL tools on Mac? Thank you!!!!!!

  • @isabelbungu9685
    @isabelbungu9685 Рік тому +1

    Thanks so much. It worked!

  • @林荣熙
    @林荣熙 26 днів тому

    Can Intel Mac install it? I

  • @Sthitadhi1
    @Sthitadhi1 Рік тому +1

    Thank you very much!

    • @sci.tech_zone
      @sci.tech_zone  Рік тому +1

      You're welcome! Kindly let me know if there is any topic of your interest you need explaination on

    • @shaziakhan3575
      @shaziakhan3575 Рік тому

      ​@@sci.tech_zone Sir plzz make a video on how to run autodock vina in macbook after following this video for installation

  • @MuhammadSaleem-go7ll
    @MuhammadSaleem-go7ll 10 місяців тому

    I installed as you told but it says "zsh: command not found: Vina" how to solve this

    • @sci.tech_zone
      @sci.tech_zone  9 місяців тому

      Have you set the security settings?

  • @ItsSAAL
    @ItsSAAL 8 місяців тому

    thank you so much

  • @BasudevMaity-rp1ff
    @BasudevMaity-rp1ff Місяць тому

    Does not work; zsh:command not found: vina

  • @avrycfan69
    @avrycfan69 Рік тому

    Thank you so much!!!

    • @sci.tech_zone
      @sci.tech_zone  Рік тому

      You are welcome. If you have any topic of interest you want me to make video on let me know.

    • @sci.tech_zone
      @sci.tech_zone  Рік тому

      please like and subscribe to the channel. Thanks

  • @curiousBPM
    @curiousBPM 2 роки тому +1

    hey buddy it says zsh: command not found: vina for me

    • @sci.tech_zone
      @sci.tech_zone  2 роки тому +2

      Which of the commands says that?

    • @ecopro6031
      @ecopro6031 Рік тому

      @@sci.tech_zone I have the same problem. When I type "vina", it showed:"zsh: command not found: vina". Could you help

    • @ecote7488
      @ecote7488 Рік тому

      Same here, even after following the whole process.

    • @rageshwarimarolikar4985
      @rageshwarimarolikar4985 Рік тому

      same here

    • @ilayda3781
      @ilayda3781 Рік тому

      same

  • @SabilaRomadhona
    @SabilaRomadhona 4 місяці тому

    how can i enter my password in setting, help me please:>

    • @SabilaRomadhona
      @SabilaRomadhona 4 місяці тому

      sorry, in terminal

    • @user-pc1pw6xv2y
      @user-pc1pw6xv2y 25 днів тому +1

      @@SabilaRomadhona did you figure that out, im struggling with that part too

    • @hanyzinad4371
      @hanyzinad4371 23 дні тому

      @@user-pc1pw6xv2y me too same error