@@scienceandvighyaan-yuvishka yesterday I visited but I don't found the format that supported in Argus lab plz can you send me the link or explain the process plz
@@rishikeshdash12 arguslab supports pdb files ...so download the ligand molecule from pubchem or any other database and convert it to pdb file using babel software. Go to this link to download babel openbabel.org/wiki/Main_Page. ( Babel can convert type of files to other types.)
![ArgusLab [optimización molecular como un pro]](http://i.ytimg.com/vi/d7APWtfTlFQ/mqdefault.jpg)
Madam Please guide me during docking I get interruption is there RMSD value work while selecting the protien...which is given in argust..
Mam is it necessary to remove hetero atams from protein and water molecules. And is there any option to do so in arguslab
prasadureddym it’s upto your wish
But generally we remove it for reducing the time
prasadureddym see my upcoming video to remove water molecules
How to export the complex and conformation.. how to perform covalent docking with it?
What do you mean by covalent bond?
Would you like to discuss bonding
@@scienceandvighyaan-yuvishka I am asking about covalent docking not covalent bond
If value of RMSD come more then literature so it affects docking.. please guide me..
kanhaiya dadure then do docking with increased trials
Mam, is it necessary to add hydrogen.???
Yes we need to add hydrogen. Because during cyrstallography due to small structure of hydrogen, that is removed.
From which Database Ligand molecules will be found?
Any e.g. zinc
@@scienceandvighyaan-yuvishka yesterday I visited but I don't found the format that supported in Argus lab plz can you send me the link or explain the process plz
@@rishikeshdash12 arguslab supports pdb files ...so download the ligand molecule from pubchem or any other database and convert it to pdb file using babel software. Go to this link to download babel openbabel.org/wiki/Main_Page. ( Babel can convert type of files to other types.)
@@Scienceforall2020 thank you sir for the help
hello maam please guide me about pdb sumgraph
i will upload the video regarding it...Subscribe my channel for viewing it
ua-cam.com/video/TxZoAA7pIA4/v-deo.html
how to Analyze the result
nirav ghinaiya I ll elaborate
nirav ghinaiya see this ua-cam.com/video/l6RfFxACZfc/v-deo.html