NGS Data Analysis 101: RNA-Seq, WGS, and more -

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Today's webinar agenda:
1. Brief Review of Next Generation Sequencing
2. Understanding NGS Data Outputs
3. Whole Genome Sequencing Data Analysis
4. Working with RNA-Seq Data
5. Wrap Up + Q&A
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New to bioinformatics analysis for NGS data and want to learn more?
One of the benefits of Next Generation Sequencing is the large amount of data that can be generated for each sample and each project. Often, though, it can be challenging to make sense of your data and perform meaningful analysis to plan the next stages of your research.
For all types of NGS, the sequencing is often only the beginning of the project. Once you have this data, you may want to look at small insertions or deletions in your samples (Whole Genome Sequencing), learn more about differentially-expressed genes after treating your cells with a specific drug (RNA-Seq), or determining what prokaryotes compose the microbial community that is present in a soil or water sample (16S rDNA Metagenomics).
Sorting through large data sets and interpreting your results can often be a bit intimidating.
In this webinar, we'll discuss data analysis for NGS data, including running through examples for different types of analysis you may want to do for your project!
You'll learn about:
•An introduction into processing NGS data
•How that data can be used for different types of analysis, including:
- Variant Calling
- Differential Gene Expression
- and more
•Troubleshooting common issues that can arise during analysis
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Links to additional NGS resources:
- Knowledge Base and Videos: www.abmgood.com/marketing/kno...
- Next Generation Sequencing Blog Posts: info.abmgood.com/blog/topic/n...
- abm's Next Generation Sequencing Services: www.abmgood.com/Next-Generati...
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[@arpitpanda390]

I work as a bioinformatician and take a lot of these things for granted. Thank you for explaining this really well! It was still very instructive going through this video and filling the gaps in my knowledge.

[@abmgood]

Hi Arpit, thank you for watching our webinar and leaving such a nice comment! Please let us know if you have any questions and we will try our best to assist you!

[@dkvision7473]

@@abmgood you happy 😊 I hope 🤞 can come bye

[@mrudullalitya7380]

Hi Arpit can i get ur mail id ?

[@shanefitzgerald9339]

Thank you for the great videos!

[@abmgood]

Thanks for watching!

[@Tenai-029]

Wonderful. Really informative, thanks for this.

[@abmgood]

Great to hear that you found the video helpful, Cleophas! :)

[@ranjithkumar8063]

That's amazing. Do you guys have any tutorials or one to one hand on training for beginners?

[@esmabilen4721]

Thank you for video. That is so informative and understandable

[@abmgood]

Glad you enjoyed it!

[@HewanDemissie]

Thank you very much. Very imformative.

[@abmgood]

Thanks for watching! Glad it was helpful ;)

[@mochipham5943]

Very helpful, this video guide me how to design experiments. But I've haven't understood about the Variant calling Analysis, please notice me if you post something related to this topic. Thank you very much.

[@k2btube]

This is an excellent video !!!

[@abmgood]

Thanks for watching! :)

[@Its_InduB]

Hey can you please provide any video related to CRISPR data analysis?? After getting desired gRNA and target sequence

[@rosaloffredo4929]

Very informative video for who, as me, is approaching to NGS world.

[@abmgood]

Glad you found the video helpful! ;)

[@dkvision7473]

@@abmgood f

[@kasthurirajendran6293]

Thanks for the informative video.

[@abmgood]

You're very welcome! ;) Thanks for watching.

[@Michael-il8ls]

do they compare healthy cells vs cancer cells for the same organism?

[@gautamnisha7193]

Thanks for the video

[@abmgood]

Thanks for watching! ;)

[@JyotiKumari-fu6js]

Very informative 😊

[@abmgood]

Glad it was helpful! ;)

[@ralsg5409]

Deseq2 needs raw counts, not normalised counts. Why are you suggesting to run Deseq2 after Stringtie normalisation? Thank your for the video

[@abmgood]

Hello there,
You are correct that DESeq2 uses raw counts and not normalized counts, apologies for the confusion.

[@johirislam8174]

I want to analysis NGS data in linux. So how can i do that

[@adarshraj.j1335]

can you also show us the command lines used for sequencing either in linux ???

[@abmgood]

Hello Adarsh,
We will let our content production team know! Thanks so much for your suggestion :)

[@alisaber502]

Hi there,
Its been a while that I am using this book to learn how to analyze Genome data: "Computational Exome and genome Analysis"
But I need a faster way to watch webinars or videos and learn how to analyze genome instead of reading this thick book!
Do you have any suggestions to me? Any channels or websites?

[@ruzmayuddinmamat8438]

Hi Sir, do you have a pdf copy of this book? Kindly can you share this book with me?

[@masumasultana1236]

17 min to 25 min RNASeq

[@abmgood]

Hi Masuma, did you have a question about the content?

[@mrmeach1967]

12:58
de novo assembly

[@anuragbari9535]

Is G and JBrowse a paid software ???

[@ekapurwanti2387]

Assalamualaikum mohon ijin bergabung kami Jalasenastri Ny.eka agus riyanto Ranting G cabang 3 KP 2 Surabaya.Terimakasih🙏