How to Make an SDS-PAGE gel
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- Опубліковано 22 сер 2024
- Alright so here's a quick video on how to cast an SDS-PAGE gel. Although recipes can vary, the ingredients shown here are almost always used. Remember: always add TEMED last, and pour into plates immediately after!
Already know how to make a gel, but have problems with leaky gels? Check out our other video on How to Avoid a Leaky SDS-PAGE gel: • How to Avoid a Leaky S...
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Jesus... The amount of uncertainty I have in the lab going off verbal descriptions sucks. It's so easy seeing it visually.
i feel that. all about visuals ;)
True
Amen
Ang
Same here! Reading it: Wait, what?. Seeing it: Oh. That's easy.
Rather than pipeting the gel in, I prefer to pour directly from a 15ml conical (or 50ml if pouring 4 gels from one tube). I find it more convenient and less bubbly - and it makes it faster if you're trying to pour 4 gels before your acrylamide polymerizes. Also if you have trouble with leaking, try turning the pads at the bottom upside down or lay a strip of parafilm (don't stretch it) along the bottom pad before seating the glass plate.
Hi, I'm currently a biology student learning to be a lab technician with a professor who's bad at explaining things. This video is very helpful.
Most guides to hand-casting gels (as published by BioRad, etc) recommend that the distance from the bottom of the well to the top of the resolving gel should be at least double the depth of your sample once loaded into a well. As your sample runs down the gel, it gets backed up at the front between the stacking and resolving gels. This allows all of the proteins to start entering the resolving gel closer to the same time. So, the longer the stacking gel, the better the resolution of your bands.
My teacher used your video as an instruction video, be proud
That was incredibly useful. Performing a SDS-PAGE soon, I'm feeling content now that it's not going to be a desaster :D Thanks, good job for that video!
Here are a few things you can try: 1) Make sure your comb is clean and dry. Any water droplets can create bubbles in the gel and cause the wells to become deformed. 2) If you are using isopropanol/ethanol etc. to straighten your resolving gel, remember to pour it out before putting in the stacking gel. It can also help to wash with some water before adding stacking gel. 3) Increase your APS concentration. I like to use 20%, and that can help with polymerization. Good luck!
At what% the isopropanol solution has to be added
nigga you saved my life
Rodolfo Osuna Rodolfo shut up nigga. He saved mine too. And he's cute. Shiii.
If you have leakage, you can tape the bottom of the plates together after you place the two glass plates in the casting stands and before placing them in the casting frames. This helps ensure you wont have leakage when pouring the lower gel. It is really easy to remove the tape once the lower gel and stacking gel have polymerized.
Thank you so much for making this video!! We use butanol instead of isopropanol and rinse a buncha times with water and dry it before adding the stacking gel.
You just saved me from my practical today!!🙏🏼 thank you
@alabonneheure1 It's probably a seal problem. Have you seen our "How to Avoid a Leaky SDS-PAGE gel" video? (there is a link in the description box above)
Try the pen/microfuge tube trick. If you still have problems, let us know =)
@TheLiona84
It can take from 15 to 45 minutes, depending on what percent gel you are making, and how much ammonium persulphate and TEMED is added. An indication that your resolving gel is ready is when you see a clean straight line form at the gel-isopropanol interface when the gel is ready.
Yes that can happen. Here are are few things you can try: 1) Make sure your comb is clean and dry. Any water droplets can create bubbles in the gel and cause the wells to become deformed. 2) If you are using isopropanol/ethanol etc. to straighten your resolving gel, remember to pour it out before putting in the stacking gel. It can also help to wash with some water before adding stacking gel. 3) Increase your APS concentration. I like to use 20%, and that can help with polymerization. Good luck!
thatguy1w The width of the gel depends on the volume of the wells that you want. 1.5mm is usually ideal for 50ul wells, but 0.75mm is what we use in our lab. It's the suitable width for 30ul wells, which are the most common size for gel electrophoresis.
@ dude in video, you should never allow the Acrylamide to spill over after you add the comb. That stuff is highly toxic (neurotoxic) and can even cause cancer. You should press a piece of 'Kimwipe' against the glass to suck up any spill overs.
1.وقدتملحصولI
Awesome vid!! the plates and the casting frames looks exactly like the ones we have in UBC...
Awesome video!! the plates and the casting frames looks exactly like the ones we have in UBC...
1 cm is commonly used and taught, so that's what we suggest here, especially if you are making your first gel. You can leave a smaller space if it works, just make sure you have enough space so that the samples can enter the stacking gel, and have the opportunity to reach the resolving gel at the same time.
@VegasPartier Yes, add the stacking layer until it almost overflows. Then when you slowly put in the comb, some of the mixture should overflow. And don't worry about the pipette tip - plastic is just fine! Good luck on your next gel =)
@ishanrathore for conductivity. Distilled water acts as an insulator, therefore electrolytes are required to allow the current to flow. These are provided by buffer!
WOW thanks :) I'm doing my first gel tomorrow... it doesn't look so confusing now
@TheLiona84 and yes, after it solidifies, pour off the isopropanol (or whatever you are using) and then add the stacking gel.
Yes you can use ethanol instead of isopropanol to line the top of your resolving gel (as shown at 3:12 in the video)
@TheLiona84 You can use water but be aware that water can slightly dilute the gels. So if you are working with a high molecular weight protein (the band appears near the top of the resolving gel), you don't want to use water because a gradient can form at the top of the resolving gel, and the protein will not separate properly.
So you can use water, but if you have a high molecular weight protein, I would not recommend it.
3:04 "led the charge for the mars" lol these captions are hilarious.
Very clear video
Thanks for the nice video. Lately sometime I fail to make perfect well, and I realize it when I load my sample it won’t go through coz there are this sheet of the gel between the well. Might anyone have a suggestion? Many thanks
@zileburki Yes you can. Store the gel (inside the glass plates and with the comb) in a container, submerged in the Running Buffer that you use when running the gel. Cover the container with the lid. You can store it at room temp but I prefer at 4 degrees. Just remember to use the gel within a couple of days =)
Thank you for creating this video! very kind of u guys .
Thank you so much for this video! it is incredibly helpful!
@nana22124 Yes. As you see in the video at 3:10, add a layer of isopropanol to keep the gel straight, and wait until solidified (about 15 minutes). Then add the stacking gel.
@ishanrathore well what is a buffer? Buffers provide us with an environment that tries to keep a consistent pH. So here we are using two different buffers: pH 6.8 for the stacking gel, along with pH 8.8 for the resolving gel. If we didn't use buffer, then the protein samples would migrate at the same rate in both the stacking and resolving gels.The wikipedia article on SDS-PAGE provides more detail on how this works (sorry can't post the direct link here, UA-cam won't let me).
Hello, your video is so interesting and really helpfull to understand SDS PAGE's gel making.
I have a question that I wanna ask. Why you should you tris HCl 8.8 in resolving gel and tris HCl 6.8 in stacking gel? What's difference between the two kind of tris HCl? Thank you
The different pH-value might be because of the protein denaturated structure. But I am not sure what the exact reason is
Those are automatic captions that youtube generates...so they are not accurate, but they are definitely entertaining to read sometimes :)
I'm assuming you are doing a Western blot. I have never used a torn gel, but it should probably work as your samples are not running through the gel, but just transferring from gel to membrane. Just make sure you put the pieces back correctly! Let us know how it goes :)
Leakage at 3.14!...just when he added isopropanol😅😅😅
I do everything the same, but I usually get bubbles forming at one end of the combs, so I end up losing a well. Sometimes it's ok since there's enough gel wall for loading my ladder. Any recommendations?
oops! sorry i accidentally deleted @admarshall617's question when responding:
the question was: "how long does it take for the stacking gel and the resolving gel to solidify "
our response is: "It can take from 15 to 45 minutes, depending on what percent gel you are making, and how much ammonium persulphate and TEMED is added. An indication that your resolving gel is ready is when you see a clean straight line form at the gel-isopropanol interface when the gel is ready."
Thanks so much for sharing
You guys are awesome! Thank you!
@labtricks we use 8.8 pH Tris for both resolving and running gels. what is the purpose for the lower pH in the resolving gel?
@pkgem we use neat (pure) isopropanol, straight out of the bottle
I'm at work so reading the subtitles. Starting from 0:29 it gets hilarious.
The amount of uncertainty I have with the music is greater than that for the procedure itself c:
Every step of SDS PAGE is clearly demonstrated...!
@tranceaddictallnight you want the pH to be about two pH units lower than your running buffer. In this case we are using Tris-glycine buffer for running the gel, which has a pH around 8.
What is the pH of your resolving gel? And what are you using as your running buffer?
"security accordion" dibs on my new band name
You should be able to get these ingredients from any chemical company, so just ask the company from where you get your other lab supplies. Note: acrylamide can be purchased either in solid (powder) form or as a solution - I would suggest buying the liquid form to avoid handling the powder, as acrylamide is a neurotoxin. Regardless of whether you buy it in solution, or make your own solution from the solid form, be careful with acrylamide.
Question: Why 1 cm below the comb marked?? Why not, less?? Ive seen in my lab some people leave kind of .3cm between the comb and the solving gel... is it correct? thank you!! great videos!!
Yes, very helpful. This isn't very hard as compared to a lot of thins, but I am always worried that I will screw it up.
Using filter paper will not harm gel in any ways? What about if it leaves some of it's constituents in the liquid and it get solidified with the gel and can later effect your sample protein?
We got the same apparatus for this. Did you remove the corners from the comb? Because we got some corners there and bubbles always come up over time and the outside bags are ruined then every time
Nice video, thank you!
Used my split gel for a western and it worked fine :)
Thank you brother... helpful for me
Why do you put so much stacking gel solution on top? I know it condenses during/after polymerization, but is it dangerous to spill the solution when you put in the comb? Or is it the concentration & amount of Acrylamide that makes the difference?
Have u got any protocol for prepration of the reagents.
If the gel tears during transfer onto a cassette sandwich, can it still be salvaged if there is an attempt to put the pieces back together? Or should the gel be binned? I just transferred my samples from a torn gel onto a PVDF membrane and I hope my attempt to "reform" the gel is not in vain...
Hi. I hv 2 questions. Why add isopropanol to removes bubbles and why is there stacking and resolving gel ?
Thank you for the demonstration. I have a question about the time limit that I can postpone loading the wells by my Lysate. Can I make the gel and load it the day after? How I need the keep it and prevent it from drying out? Thank you.
I generally make SDS gels in advance, wrap them up individually with paper towels, wet them with milli Q and then store it at 4 degrees. I’ve used 1-2 week old gels and they worked fine.
how thick is the gel supposed to be? 1.5 mm? will all molds have the thickness?
I always have a problem with stacking gel...i don't know it won't polymerize. could u pls let me know the recipe for preparing stacking gel.
thanks i like ur videos
thanks @labtricks
but even when we use single gel (native PAGE) or also agarose gel then also buffer is used instead of water
Also are the solutions purged with N2 beforehand? Cause the biorad manual says to do that
What is the tris buffer for, you don’t need it for the polymerization and TEMED/APS work at RT?
Thank you! This helps a lot.
WHAT IS THE QUALIFICATION REQUIRED FOR THIS JOB , WHAT ARE THE PROSPECTS OF THIS AND WHAT ARE THE PRODUCTS THAT CAN BE MADE ?
Brilliant, I would like also to add that Bio-Rad company also sell Pr-prepared gels. good idea for assuring high quality results.
Again thank you,,
Hello, first of all thank you for this video. I am trying to get a vertical gel electrophoresis system from Bio-Rad but they have been so difficult to work with. It seems to be a mix of language barrier and laziness, or maybe I am too frustrated so I think they are being lazy and it's just the language barrier. Can anyone please tell me of their experience with this company and recommend other sources for the vertical gel electrophorsis system?
Thank you for the effort!
Put a blue tip round the back, forcing the spring to clamp down further.
in our lab we have two casettes and a spacer. and we add water to create a cushioning effect or something..howz that different than what you have done here?
Cool gut a molecular biology lab tomorrow and this was handy
@labtricks
Can we use ethanol instead of isopropanol ? Does it affect the gel contents ? And if we can use ethanol is it absolute or diluted with water?
when you cast the resolving gel do you wait for it to solidify before adding the stacking gel?
Awesome vid!
I've got a question..
How to prepare sample buffer and loading sample too for sds.??
how long do you leave the water in to check if the plates are leaky?
plz can we use pure water in place of isopropanol?and what is the diference?
@poxyratarsed Did you remember to add isopropanol? That is what makes the resolving gel straight =)
Never had problems casting gels for westerns till this week where all my gels have this white opaque appearance instead of the normal clear appearance once harden. Do you have any idea what's going on?
Why we are adding isopropanol ? Can we add water instead?
Please answer
Is the casting stand necessary?
can we use ethanol instead of isoproponal to remove bubbles?
0:34 "in front of the Pope respect that" lol
We use 8.8 pH TRIS for our stacking gel in our lab. What is the reason for the lower pH in yours?
why are buffers used in gel preparation & not water ? plz with detailed reason
how m time we should wait for running gel solidification, and then we add thestaking gel?thx
When I add the acrylamide solution to the casette, I mark the level with a permanent marker then add propan-2-ol and let it polymerize. On polymerization, the actual gel gets lower than the mark so the size of the gel varies every time from one gel to another. Any suggestions?
isopropanol absorbs the water from resolving gel.
Thank you so much!
how long does it take for the gel to be solidify in 4C?
Great! It helps a lot!!
how I'm going to choose what percentage of polyacrylamide I need to use? I mean there ie 8% 12% and so on?
I use glicerol for the resolving gel. (0,4 mL for gel to 10 %)
Thank you so so much
hello. I would like to know, where can I get those ingredients? thanks
Hi, i have a question about Mini-PROTEAN TGX Stain-Free precast gels...
there is number on the packet "4-15%"...
What do the numbers mean separately? 4? 15?
+Shaig Shaggy The numbers correspond to the percentage of acrylamide in the resolving gel. A 4-15% gel is a gradient gel, with the lowest percentage of acrylamide just below the stacker being 4%, and the highest percentage is 15% near the bottom of the gel. The percentage increases from the top to the bottom of the gel. A single percentage gel would have one number, i.e. 10%.
+Julie B Thank you for your answer...
QUESTION: what do you do if you get leaks during the leak test?
Take your plates out and restart.
Why isopropanol is not added to stacking gel ?
THIS VIDEO CLEARLY EXPLAINS THE WHOLE PROCEDURE OF MAKING SDS PHAGE.....