Metagenomics Taxonomic Classification using Kraken 2 in BioBam's OmicsBox

[@quinattasneemrafique536]

Could you kindly suggest me scientific papers you studied to understand the general workflow of Metagenomic analysis. I would be ever grateful.

[@Bioinformagician]

Sure, here are some papers and articles I found helpful:
1. www.ncbi.nlm.nih.gov/pmc/articles/PMC4059276/
2. microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-2-3
3. bioinformaticsworkbook.org/dataAnalysis/Metagenomics/MetagenomicsP1.html#gsc.tab=0
4. scilicium.com/metagenomics-analysis-pipeline/

[@SavTheScientist]

This woman is saving me from suffering through PhD

[@danielacardenas6424]

What does it mean that the sequence GC content fail? do you know what would be the cause?

[@aris_budiman]

Thank you for your explanation

[@subbaramireddyremala1358]

Could you please post r tutorial for Factorial mendelian randomization, from selecting genetic instruments to analysis. Thankyou

[@Ice84letters]

I am struggling to understand the pre-processing of rnaseq data...should i do it with python? R? command line? i think command line is it easy? what is the best pipeline? fastq-trimmomatric-star? the download of several files from the webpage directly with the command line, manipulate single vs paired ends... you really make excellent videos i do not know if you could talk about this, it would really help me, thanks a lot for all you teach us

[@Ice84letters]

an example from a geodatase for at least two samples paired-end that would be great!!

[@kailashchandhr7240]

Well done

[@ibrahimadiallo1020]

Thank you

[@mrjaime211]

Doing this on proprietary software is just not good