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Satija Lab
Приєднався 16 лют 2016
CICA Virtual Seminar Series- Abdul Abdul- 10/01/2024
Abdul Abdul presents his work on IRISeq, an innovative new technology to perform spatial transcriptomics in a highly scalable and cost-effective way (less than $50 per tissue section). Developed by Junyue Cao’s lab, the method leverages barcoded sender and receiver beads to encode the spatial information of mRNA molecules - no optics or imaging required!
This seminar is part of the Center for Integrated Cellular Analysis Virtual Series, a set of online talks discussing new computational and analytical methods for single-cell multi-omics.
This seminar is part of the Center for Integrated Cellular Analysis Virtual Series, a set of online talks discussing new computational and analytical methods for single-cell multi-omics.
Переглядів: 61
Відео
New Advances in Single-Cell and Spatial Genomics (2023)
Переглядів 2,4 тис.7 місяців тому
Overview of exciting new computational and experimental developments for single cell genomics. Slides and additional resources are available at: www.satijalab.org/scgd
CICA Virtual Seminar Series- Zehao Zhang- 05/21/2024
Переглядів 1737 місяців тому
Zehao Zhang presents his work exploring cellular dynamics during mammalian aging. He introduces the PanSci dataset, a single-cell transcriptome atlas of more than 20 million mouse cells encompassing more than 600 tissue samples. The dataset represents a broad set of organs, life stages, and genotypes - and uniquely enables the identification and characterization of more than 200 cell states ass...
CICA Virtual Seminar Series- Carol Dalgarno and Longda Jiang- 04/16/2024
Переглядів 2568 місяців тому
Carol Dalgarno and Longda Jiang present their work combining Perturb-seq with Parse Biosciences combinatorial indexing and Ultima sequencing to systematically perturb signaling regulators across cell lines and infer causal regulatory changes from scRNA-seq/spatial data. This seminar is part of the Center for Integrated Cellular Analysis Virtual Series, a set of online talks discussing new compu...
New Advances in Single-Cell and Spatial Genomics (2024)
Переглядів 9 тис.8 місяців тому
Overview of exciting new computational and experimental developments for single cell genomics. Additional resources are available at: www.satijalab.org/scgd 00:00 - 8 exciting developments from 2023 1:17 - Tracking cells across time 6:35 - Foundation models for cellular biology 11:10 - Barcoding cellular interactions 14:25 - Reference-free analysis 18:49 - DIY Hi-res Spatial Analysis 22:10 - Co...
CICA Virtual Seminar Series- Ben-Chetrit- 01/09/2024
Переглядів 21310 місяців тому
Nir Ben-Chetrit presents spatial RNA protein profiling to understand how the tumor microenvironment drives macrophage heterogeneity and function in breast cancer. This seminar is part of the Center for Integrated Cellular Analysis Virtual Series, a set of online talks discussing new computational and analytical methods for single-cell multi-omics.
CICA Virtual Seminar Series- Cortes Lopez- 11/14/2023
Переглядів 175Рік тому
Mariela Cortés-López presents 'GoT-Splice', a multi-omic approach that uses long-read sequencing for single-cell transcriptomics and proteogenomics. Her work allows for the simultaneous profiling of gene expression, cell surface protein markers, somatic mutation genotyping, and RNA splicing within a single-cell. This seminar is part of the Center for Integrated Cellular Analysis Virtual Series,...
CICA Virtual Seminar Series- Blair- 6/20/2023
Переглядів 397Рік тому
John Blair presents 'Phospho-seq', a multimodal, sequencing-based approach that reveals intracellular protein profiles as well as cell signaling dynamics and more in single-cells. His work allows for high throughput discovery of interactions between cell signaling, gene regulation, and gene expression in multiple cell lines and brain organoids. This seminar is part of the Center for Integrated ...
CICA Virtual Seminar Series- Kowalski & Wessels- 5/2/2023
Переглядів 326Рік тому
Madeline Kowalski and Hans-Hermann Wessels present 'CPA-Perturb-seq' an extension of the Perturb-seq framework to study cleavage and polyadenylation, a post-transcriptional regulatory process. Leveraging a novel statistical framework to characterize single-cell heterogeneity in polyA site usage, their work identifies perturbation-dependent changes in intronic and tandem polyadenylation, identif...
CICA Virtual Seminar Series- Xu- 4/4/2023
Переглядів 239Рік тому
Zihan Xu presents 'PerturbSci-Kinetics', a novel combinatorial indexing method that captures single-cell transcriptome, nascent RNA, and sgRNA identity in pooled CRISPR screens. His work represents a low-cost and scalable technique that can be used to identify key regulators of RNA kinetics. This seminar is part of the Center for Integrated Cellular Analysis Virtual Series, a set of online talk...
CICA Virtual Seminar Series- Zhang- 2/28/2023
Переглядів 311Рік тому
Bingjie Zhang presents her work using multimodal single-cell sequencing technologies to characterize antigen-specific CD8 T cell responses to COVID vaccination and disease. Her work demonstrates how to measure and integrate diverse molecular modalities, including ATAC, RNA, protein, immune repertoire sequencing, and MHC dextramer staining, all at single-cell resolution. This seminar is part of ...
CICA Virtual Seminar Series- Lu_Sziraki- 11/8/2022
Переглядів 3202 роки тому
Ziyu Lu and Andras Sziraki present two recent manuscripts that leverage the EasySci-RNA technology to explore cellular dynamics across the entire mammalian brain during aging and neurodegenerative disease. Their work highlights the contribution of rare cell types to the underlying molecular mechanisms driving normal and pathological mammalian aging This seminar is part of the Center for Integra...
CICA Virtual Seminar Series- Jamie Woych- 07/26/2022
Переглядів 2212 роки тому
Jamie Woych presents a cell type atlas of the telencephalon of the salamander Pleurodeles waltl and combines whole-mount hybridization chain reaction (HCR) in situ hybridization, brain clearing (iDISCO), and light-sheet imaging, to create a 3D molecular map of the pallium in order to elucidate the evolutionary history of the dorsal ventricular ridge and the neocortex. This seminar is part of th...
CICA Virtual Seminar Series- Franco Izzo- 06/21/2022
Переглядів 2472 роки тому
Franco Izzo introduces his recent preprint on Genotyping of Targeted loci with single-cell Chromatin Accessibility (GoT-ChA). GoT-ChA is a high throughput, single-cell multi-omics platform for linking genotype to chromatin accessibility at single-cell resolution. It is compatible with the 10x Genomics scATAC-seq kit, and is a powerful tool for understanding the epigenetic effects of somatic mut...
CICA Virtual Seminar Series- Yuhan Hao & Tim Stuart- 05/24/2022
Переглядів 7942 роки тому
First, Yuhan Hao discusses "bridge integration", a computational method that harmonizes single-cell datasets across diverse molecular modalities by using multi-omic data as a molecular “bridge”. Bridge integration enables the mapping of single-cell ATAC-seq, CUT&Tag, methylation, and CyTOF profiles to be mapped to scRNA-seq references, and allows integrative analysis to scale to millions of cel...
CICA Virtual Seminar Series- Anna Nam- 04/12/2022
Переглядів 3712 роки тому
CICA Virtual Seminar Series- Anna Nam- 04/12/2022
New Advances in Single-Cell and Spatial Genomics (2022)
Переглядів 8 тис.2 роки тому
New Advances in Single-Cell and Spatial Genomics (2022)
CICA Virtual Seminar Series- Hans-Hermann Wessels- 02/22/2022
Переглядів 5212 роки тому
CICA Virtual Seminar Series- Hans-Hermann Wessels- 02/22/2022
CICA Virtual Seminar Series- Federico Gaiti and Joshua Schiffman- 01/18/2022
Переглядів 4662 роки тому
CICA Virtual Seminar Series- Federico Gaiti and Joshua Schiffman- 01/18/2022
CICA Virtual Series - Ignacio Vázquez-García (Dec 7, 2021)
Переглядів 2652 роки тому
CICA Virtual Series - Ignacio Vázquez-García (Dec 7, 2021)
CICA Virtual Series - Bingjie Zhang & Avi Srivastava (Nov 16, 2021)
Переглядів 3633 роки тому
CICA Virtual Series - Bingjie Zhang & Avi Srivastava (Nov 16, 2021)
CICA Virtual Series - Kunal Pandit & Joana Petrescu (Oct 19, 2021)
Переглядів 2523 роки тому
CICA Virtual Series - Kunal Pandit & Joana Petrescu (Oct 19, 2021)
Virtual Series - Farhia Kabeer & Sohrab Salehi (August 17, 2021)
Переглядів 3743 роки тому
Virtual Series - Farhia Kabeer & Sohrab Salehi (August 17, 2021)
Center for Integrated Cellular Analysis Virtual Series - Tim Stuart (May 25, 2021)
Переглядів 9283 роки тому
Center for Integrated Cellular Analysis Virtual Series - Tim Stuart (May 25, 2021)
Center for Integrated Cellular Analysis Virtual Series - Aidan Daly (April 13, 2021)
Переглядів 3613 роки тому
Center for Integrated Cellular Analysis Virtual Series - Aidan Daly (April 13, 2021)
New Advances in Single-Cell and Spatial Genomics (2021)
Переглядів 10 тис.3 роки тому
New Advances in Single-Cell and Spatial Genomics (2021)
Center for Integrated Cellular Analysis Virtual Series - Efthymia Papalexi (March 9, 2021)
Переглядів 4453 роки тому
Center for Integrated Cellular Analysis Virtual Series - Efthymia Papalexi (March 9, 2021)
Center for Integrated Cellular Analysis Virtual Series - Eleni Mimitou (Feb 9, 2021)
Переглядів 8953 роки тому
Center for Integrated Cellular Analysis Virtual Series - Eleni Mimitou (Feb 9, 2021)
Center for Integrated Cellular Analysis Virtual Series - Yuhan Hao (Feb 9, 2021)
Переглядів 8773 роки тому
Center for Integrated Cellular Analysis Virtual Series - Yuhan Hao (Feb 9, 2021)
New Advances in Single-Cell and Spatial Genomics (2020)
Переглядів 12 тис.4 роки тому
New Advances in Single-Cell and Spatial Genomics (2020)
que capitulo temporada es? :c
Говори по русски,а не хонч ханч...спасибо
Я тебя не включала,откуда ,,Ты,, взялся?
Functioneaza pe televizor.😂😢🎉😮😅😊
nice
Wow! I've been looking for this content for three months. Wowsers! Thank you!!!
Any links for this year 2024 recording?
Excited for the Satija lab to share the 2023 version!
thanks for sharing
𝓟Ř𝔬𝓂𝔬𝐒ϻ
Great content! very inspirational! Thank you!
Way to go! Your content deserves a service like P r o m o S M!!!
Hi Tim, great video, thank you for sharing. I a question for you: in the second part of the video regarding data integration, do you have only untreated PBMCs? I wonder if different treatment conditions would show integration that is more variable, something similar to the naive merged dataset, since you have potentially different cells or gene pathways being activated. In my case, I have 3 batches that have different treatment groups in each of them and I am worried about batch effect. Thanks
Time series and single-cell biology, what a weird but exciting combination.
How many barcodes and what percent of RNA transcripts are captured?
HOLY SHIT DAVID FELDMAN PAPER MENTIONED
Excellent talk. Could you please share the other talks mentioned as well, could not find them.
Thanks for share this kind of talks. I'm amazed with single-cell omics, specially with spatial single-cell transcriptomics. Even if in Mexico there aren't labs that do it, i hope one day work in a lab where they do.
Hi guys, there were some great presentations at this event, but I wasn't able to see them all due to my time zone. Is there any chance that videos of the other presentations are available anywhere?
I would like to learn and work on single cell analysis...Kindly pave the way...Thank You
🔥🔥🔥
nice! great summary.
perfect!👍
so fancy
tremendous information in half an hour, thanks a lot
a beautiful and highly informative talk. thank you!
Thank you for your summary video.
Will the 2019 day videos be uploaded? Would be cool!