Clickbait Science
Clickbait Science
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Molecular Dynamics to Blender
Introduction to molecular dynamics simulation data rendering in blender 3D, using a super cool free addon.
Molecular Nodes addon:
github.com/BradyAJohnston/MolecularNodes
VMD:
www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD
0:00 Introduction
0:20 Setup
2:14 Aesthetics
3:44 Different Materials
4:28 MD Rendering Important Considerations
Link to the paper of the simulation used in intro:
Samuel Bertolini, Arnaud Delcorte,
Reactive molecular dynamics simulations of lysozyme desorption under Ar cluster impact,
Applied Surface Science,
Volume 631, 2023,157487, ISSN 0169-4332,
doi.org/10.1016/j.apsusc.2023.157487.
Music used
If I Could Fly by Jonny Easton
Link: ua-cam.com/video/B6aXP4TjkP8/v-deo.html
Quiet Place by Jonny Easton
Link: ua-cam.com/video/coPASWZf0wg/v-deo.html
"Punch Deck - Ethereal" is under a Creative Commons (CC BY 3.0) license
Music promoted by BreakingCopyright: bit.ly/bkc-ethereal2
Переглядів: 2 483

Відео

Scientific Illustration in Blender: A Basic Introduction
Переглядів 10 тис.2 місяці тому
This video gives a succinct overview of the entire creative process in blender, with a little design 101 before the end. 0:00 Summary 0:35 Asset Modelling 3:25 Assembly with Geometry nodes 4:44 Materials 5:23 Lighting 6:26 Composition 7:55 Rendering 8:34 Result Musical Credit: AlexiAction - AbstractWorld from Pixabay Adrift Among Infinite Stars by Scott Buckley | www.scottbuckley.com.au Music p...
Create Stunning 2D Data Visualisations in Blender, Easily
Переглядів 7 тис.3 місяці тому
This video is a quick review of different ideas for scientific data visualisation in blender using a material as controller. Learn how to change colour gradients, create controllable effects, apply vertical displacement to a surface, render your data as a volume, and combine layers, in 3 minutes! musical credit: penguinmusic - Modern Chillout (Future Calm) from Pixabay AlexiAction - AbstractWor...
Histology Diagrams in Blender with Geometry Nodes
Переглядів 4,8 тис.3 місяці тому
This tutorial showcases a quick and dirty way to easily generate cell layer/histology diagrams using a geometry nodes setup. 00:00 Intro 00:10 Geo Nodes Setup 00:45 Customisation 01:25 Change shape Musical Credit: penguinmusic - dreamy technological presentation bedtime after a coffee by ikkunn (Barradeen) | soundcloud.com/ikkunwastaken/ Creative Commons Attribution-ShareAlike 3.0 Unported crea...
Make Polymers with Geometry Nodes! - Blender 4.0 for scientists
Переглядів 1,2 тис.5 місяців тому
Step-by-step process of taking in a monomer and chaining it into a procedural polymer controllable with Bezier curves. By the end of this video you will not only know how to make polymers but you will also familiarize yourself with geometry nodes 0:00 Import Monomer 0:35 Prepare the molecule for chain 1:57 Geometry Nodes Music credit: Colorful Flowers by Tokyo Music Walker | soundcloud.com/user...
Beautiful Real World Maps | Blender Tutorial
Переглядів 7 тис.5 місяців тому
This one may be more of interest for our friends in environmental sciences. There is much more to this addon, many tuts are online already I'm amazed that it is free honestly. BlenderGIS addon: github.com/domlysz/BlenderGIS 0:00 BlenderGIS Basics 1:12 Aesthetic tips 1:55 Add Seawater Musical Credit: Corporate Soft by LesFM | lesfm.net/positive-background-music/ Music promoted by www.chosic.com/...
Import Any Protein Structure | PDB to Blender
Переглядів 3,6 тис.6 місяців тому
Import any protein structure from protein data bank into blender! I keep these fast paced so don't hesitate if you have any questions. ChimeraX: www.cgl.ucsf.edu/chimerax/download.html 0:00 Atomic Blender 0:38 Chimera To Blender 1:31 Aesthetics Music Credit: 1 - my own attempt at music 2 - "Liquid time" - UA-cam Library Stock footage artist Taryn Elliott from Pexels
Quick Protein Model | Blender Tutorial
Переглядів 1,9 тис.6 місяців тому
Turn any mesh into a protein instantly with a few modifiers! Music credit: Cyberpunk Computer Game | IDRA by Alex-Productions | onsound.eu/ Music promoted by www.chosic.com/free-music/all/ Creative Commons CC BY 3.0 creativecommons.org/licenses/by/3.0/ Swans in Flight by Asher Fulero from UA-cam Library

КОМЕНТАРІ

  • @BenP-hr2rc
    @BenP-hr2rc День тому

    Mesh Boolean node is very heavy, and should be used sparingly. For a custom shape with density control, build the geometry node tree on the custom mesh shape you want to work with. Use the following nodes: Group Input (Geometry) > Mesh to Volume > Distribute Points In Volume (set to Grid) > Geometry Proximity (set to Points, Distance output) > Math (Less Than) If you multiply that result with the Voronoi's distance output (using Math (Multiply)), you can plug that multiplied value into the Volume Cube's density input. Basically, you are controlling the density of the cube by referencing both the Voronoi and a reference geometry. You can use the spacing controls on the Distribute Points In Volume OR the setting for the Less Than node OR both to dial in the precision of the shape (although be very careful with the spacing settings because setting that very low increases the cost of the operation and can crash Blender; try something around 0.100 for spacing). To make sure your whole geometry fits into the volume cube so you aren't cutting off any of your custom mesh shape, you can use: Group Input (Geometry) > Bounding Box > Volume Cube (where you plug the min and max from the bounding box into the min and max of your volume cube)

  • @davidenardi
    @davidenardi 2 дні тому

    Amazing!!! Thanks!! :)

  • @JasonCunliffe
    @JasonCunliffe 2 дні тому

    Fantastic Thankyou

  • @issac7787
    @issac7787 3 дні тому

    ..

  • @jpjpjpjpjpjpjpjp
    @jpjpjpjpjpjpjpjp 11 днів тому

    Any links to a longer video on the seawater method? I wasn't able to follow along.

    • @jpjpjpjpjpjpjpjp
      @jpjpjpjpjpjpjpjp 11 днів тому

      or even a link to an article.

    • @ClickbaitScience
      @ClickbaitScience 8 днів тому

      I have found this, very similar to what i was going for, its all in animating a noise texture fed to a bump node to control the normal of a material; /watch?v=MtlSIRh5r_E

  • @firezella
    @firezella 14 днів тому

    this deserves more subs

  • @jvdome
    @jvdome 18 днів тому

    so cool, actually useful for students to learn both blender and the subject

  • @Forjugadname
    @Forjugadname 19 днів тому

    I wish tutorials wouldn't use shortcuts because they never work when I try them, they change every few months or so I don't know but whatever function the E key is it doesn't work and I bet all the other shortcuts don't work so I have no clue what you are doing.

    • @35pen61
      @35pen61 15 днів тому

      You might want to check ur keyboard cuz i too once had those problems

    • @ClickbaitScience
      @ClickbaitScience 8 днів тому

      At which moment? For Map import? I actually don't know of another way beside the E key. Do you have an apple computer? I have had multiple reports of the addon not working for mac unfortunately

  • @lougarou2113
    @lougarou2113 20 днів тому

    The video is super intressant. Tu es français ? Parce que j’ai l’impression que t’as un petit accent.

  • @realmoonknight
    @realmoonknight 23 дні тому

    I tried Positano but the heighmap doesn't work well when zoomed in

    • @ClickbaitScience
      @ClickbaitScience 20 днів тому

      That's a beautiful place! Have you put enough subdivisions? try adding one more subdivision modifier before the displacement. What zoom level are you on to select the region?

    • @realmoonknight
      @realmoonknight 20 днів тому

      @@ClickbaitScience I tried very closeups too but somehow it does not give all the small details or the terrain. Ended up using render doc capture from google earth, it has way more detail but the combined tile set is a bit resource heavy.

  • @rekad8181
    @rekad8181 26 днів тому

    You can hold ALT while swapping ports, especially in your mix node, if you need to just swap the ports, hold down ALT. Your video is amazing btw!

    • @ClickbaitScience
      @ClickbaitScience 20 днів тому

      Ah many thanks mate! That's a nice quality of life shortcut there, I wish I knew them all

  • @sherpa7304
    @sherpa7304 28 днів тому

    Very helpful to my research team and I! Love blender, but we've never considered making our own renders like this. Going to have a crack at it!

    • @ClickbaitScience
      @ClickbaitScience 28 днів тому

      Thank you, glad I can be helpful! Show me your creations when they come out

  • @aslkjfdasfkjdaskljfajklsfa
    @aslkjfdasfkjdaskljfajklsfa 29 днів тому

    If you upload your video in 1440p, UA-cam uses a better codec, which better preserves the details.

  • @LwRedStorm
    @LwRedStorm 29 днів тому

    Hello, How do you do to solidify ? I don’t Know how to solidify just for the Z axis. Thanks

    • @ClickbaitScience
      @ClickbaitScience 29 днів тому

      Hi, Indeed the solidify modifier can give weird results. Another thing you can try without it, is apply all the modifiers. Then go to the edit mode, select all the faces, then hit E -> Z to extrude along the z axis and create the bottom. You can also do S->Z -> 0 to have a flat bottom. Whats nice with this is that you can set a different material for the rim.

  • @drchriswilmer
    @drchriswilmer Місяць тому

    Great video! Following your channel!

  • @sci-mondegraphics
    @sci-mondegraphics Місяць тому

    Thank you very much!

  • @BradyJohnston
    @BradyJohnston Місяць тому

    Really awesome video! I especially like the extra details at the end about MD and video compression. The example renders you've been showing all look really awesome, glad I can help out :)

  • @suuperigni
    @suuperigni Місяць тому

    Interesting to help change mind! Thanks for your ideas and sharing and work!

  • @swagfinger
    @swagfinger Місяць тому

    like

  • @jamawahid9408
    @jamawahid9408 Місяць тому

    Great Video!! Thank you!

  • @gihonmirth6481
    @gihonmirth6481 Місяць тому

    Wonderful Start for a unique blender channel for a specific industry. Subbed!

  • @yasin_uyghur
    @yasin_uyghur Місяць тому

    Base map doesnt load, what can i do ?

    • @ClickbaitScience
      @ClickbaitScience Місяць тому

      Do you have an apple computer? I've had colleagues with such issues on mac. Unfortunately since I don't own one I cannot troubleshoot for you

    • @yasin_uyghur
      @yasin_uyghur Місяць тому

      @@ClickbaitScience Yes I have a Mac, and before I used normally , but in this new version of blender, doesn’t work

  • @pirateking34
    @pirateking34 Місяць тому

    wow those were some nice points with a nice production

  • @locomotorafilms
    @locomotorafilms Місяць тому

    Hey man, thanks for the tutorial, I appreciate it!

  • @travissmith7471
    @travissmith7471 Місяць тому

    When I first began. I would have taken about 4 hours to do this 8-and-a-half-minute video. Because I want to know how we choose what geometry node to use. I have caught on a little better in my understanding of geometry nodes. But it was not overnight. It has been a year and a half now. I always would encourage taking a paid class. Thanks for sharing. This video was amazing.

  • @AcercateaRD
    @AcercateaRD Місяць тому

    Amazing! 😮

  • @sobreaver
    @sobreaver Місяць тому

    hmm intéressant :)

  • @sidekick3rida
    @sidekick3rida Місяць тому

    So cool! Would love videos on transforming data into images and videos with matplotlib, etc.

  • @imnezx5013
    @imnezx5013 Місяць тому

    thanks for the video !, is there any course that you would recommend for us? online or on youtube?

    • @ClickbaitScience
      @ClickbaitScience Місяць тому

      If you are a new to blender I would very strongly recommend taking the time to complete BlenderGuru's Donut tutorial here on youtube. It's kind of a rite of passage.

  • @Stephen-T-Clark
    @Stephen-T-Clark Місяць тому

    Thanks to you, I now know how I can create a Sandworm's mouth in blender. Though this may not have been your intent, know that I will use this power most responsibly.

  • @shagithyansathishkumar6283
    @shagithyansathishkumar6283 Місяць тому

    thank u

  • @jatorogames4616
    @jatorogames4616 Місяць тому

    I study biology and medical laboratory research, and have been practising blender for the last couple of months. Time to combine the two with the help of your videos :)

  • @AbhijeetPratap_official
    @AbhijeetPratap_official Місяць тому

    watched in 0.25x

  • @alirezaakhavi9943
    @alirezaakhavi9943 Місяць тому

    really interesting and nice tutorial! thank you for sharing. subbed! :)

  • @kirillalexeevsky6878
    @kirillalexeevsky6878 Місяць тому

    there is a mesh to volume node in geonodes, so you do not have to use boolean for it

    • @ClickbaitScience
      @ClickbaitScience Місяць тому

      Unfortunately this does not work because that node has no density control. So you cannot control it with the voronoi texture. @ryomizutagraphics found a workaround however in his video "Make ANYTHING porous in Blender", its quite technical.

  • @user-oo8fd2ov5m
    @user-oo8fd2ov5m Місяць тому

    Oh my Gosh that's amazing Thank you man

  • @marwamarwa-bj1by
    @marwamarwa-bj1by Місяць тому

    can u please model organs ! so helpful for me as a medical student thankks and good luck ! :D

  • @jeffdavies2824
    @jeffdavies2824 Місяць тому

    Great content. I almost didn't watch this due to the channel title. I've been using blender for years now and never had the need (or so I thought) to use the Simple Deform modifier. Now I see the power and usefulness of that modifier. Keep up the good work!

  • @tahatdh
    @tahatdh Місяць тому

    it was a great video. thanks

  • @jamesriley5057
    @jamesriley5057 2 місяці тому

    The only problem with such a workflow is that you require someone to render/illustrate the subject before you can even understand what to model. So first you have to find it on google images. Maybe you could render the subject with AI first, but at this point AI is not trustworthy for realistic renders of a cell or a virus or whatever. I love the tutorial - sub'd

  • @tunyaluxlangsub5111
    @tunyaluxlangsub5111 2 місяці тому

    I'm curious why you don't use the real PDB structures for the proteins?

    • @ClickbaitScience
      @ClickbaitScience 2 місяці тому

      In short: (speed and computer resource) vs. scientific accuracy. Although today, with Brady Johnston's molecular nodes addon getting PDB structures is so convenient that my two first tutorials on this channel are not that relevant anymore.

  • @AndreasEngels030
    @AndreasEngels030 2 місяці тому

    Again, Amazing! Nice content - good time frame for a detailed overview! I really hope this channel takes off! Already showed your channel to several researcher colleagues!

    • @ClickbaitScience
      @ClickbaitScience Місяць тому

      Thanks again! And thank you for contributing to the growth of our community, its much appreciated!

  • @98Castaway
    @98Castaway 2 місяці тому

    I've been looking for something like this!! Hope you do more in-depth videos similar to this one!!!

    • @98Castaway
      @98Castaway 2 місяці тому

      Especially animations!

    • @ClickbaitScience
      @ClickbaitScience 2 місяці тому

      @@98Castaway Thank you, I will! What type of animations do you have in mind?:)

  • @moodberry
    @moodberry 2 місяці тому

    You are a talented Blender user. I learned something, but from a beginner's point of view, here's my dilemma... Yes, each step from the primitive to the finished product is "easy" to do. But the real problem is knowing WHICH tool to use and WHEN to use it. Actually using the tool isn't that hard, but theory about what ought to be used is where I mess up.

    • @ClickbaitScience
      @ClickbaitScience 2 місяці тому

      Thank you! Yes indeed especially since there are so much of them and they are changing. That's kind of where I see the added value of my channel. 3D is my hobby, therefore I can spend lots of time trying to figure these things out. I turn them into bite-sized tutorials that hopefully align with what people from science want to create, but who can't necessarily spend dozens of hours every month to keep up with this stuff. Don't hesitate to tell me if you have some problem you need solving, that's what I do with my weekends

  • @fergadelics
    @fergadelics 2 місяці тому

    Returning to say thanks and thanks yt for the suggestion. I took a break and just had some unrelated creature fun after watching this. It was refreshing.

  • @ping_th
    @ping_th 2 місяці тому

    You’re 100% will be popular! this quality of media is really astonishing and there should be much more people to watch this channel

  • @M4rt1nX
    @M4rt1nX 2 місяці тому

    Amazing!!! Thanks a lot

  • @kristinafranco8345
    @kristinafranco8345 2 місяці тому

    Nice video ! Maybe I'll start doing my own projects thanks to your clear explanations :-)

  • @blenderzyx
    @blenderzyx 2 місяці тому

    this is so simple yet beautiful. nicely explained 👍

  • @NeelCGIs
    @NeelCGIs 2 місяці тому

    I am very new to this channel and this video surprised me how on earth you don't have at least 100k subscribers. Keep this great quality content in your future videos too and hope you will keep growing. Love from India🇮🇳❤❤

    • @ClickbaitScience
      @ClickbaitScience 2 місяці тому

      Thanks a lot kind sir! I will remember you when we get to 100k;)