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Clark Microbiology
Приєднався 9 січ 2014
Consider registering for BIOL106 (Antibiotics Research 2B) in WINTER 2023 at Clark College.
Thanks for watching! If you have questions about the class, please do not hesitate to contact me at ranitori@clark.edu
BIOL 106 is a 5 credit class with NO prerequisites. It counts as Natural Science credits. Item numbers are #3638 and #3639 (you need to sign up for both).
The following links contain more details about the class:
* Clark story and podcast about the class: www.clarkcollegefoundation.org/dna-of-dirt/
* One of the technologies (DNA sequencing) used in the class:
www.theatlantic.com/science/archive/2016/04/this-technology-will-allow-anyone-to-sequence-dna-anywhere/479625/
BIOL 106 is a 5 credit class with NO prerequisites. It counts as Natural Science credits. Item numbers are #3638 and #3639 (you need to sign up for both).
The following links contain more details about the class:
* Clark story and podcast about the class: www.clarkcollegefoundation.org/dna-of-dirt/
* One of the technologies (DNA sequencing) used in the class:
www.theatlantic.com/science/archive/2016/04/this-technology-will-allow-anyone-to-sequence-dna-anywhere/479625/
Переглядів: 290
Відео
### WINTER 2025 ### consider registering for BIOL105 (Antibiotics Research 1) at Clark College.
Переглядів 3443 роки тому
WINTER 2025 If you have questions about the class, please contact me at ranitori@clark.edu Thanks for watching! BIOL 105 is a 5 credit class with no prerequisites. It counts as Natural Science credits. In WINTER 2025 it will be run as a FULLY in-person class (both Lecture and Lab). Watch the following UA-cam video - which features a previous instructor - for additional details about the class. ...
Descending into Crevasse cave, Mt. St. Helens crater, 2017.
Переглядів 513 роки тому
Descending into Crevasse cave, Mt. St. Helens crater, 2017.
antiSMASH analysis and help
Переглядів 8 тис.4 роки тому
Hope this video is useful. If you'd like one-on-one, personalised help with bioinformatics, please leave me a message with your contact email. Reasonable rates.
Galaxy Prokka genome annotation - Part2 - Results
Переглядів 2,7 тис.4 роки тому
Hope this video is useful. If you'd like one-on-one, personalised help with bioinformatics, please leave me a message with your contact email. Reasonable rates.
Galaxy Prokka genome annotation - Part1 - setting up the analysis
Переглядів 3,1 тис.4 роки тому
Hope this video is useful. If you'd like one-on-one, personalised help with bioinformatics, please leave me a message with your contact email. Reasonable rates.
MinION run screen during a nanopore sequencing run
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Just a short video showing the MinION sequencer and screen during a sequencing run. Software = MinKNOW, Flow cell = R9.4.1.
is there any part 3 of it, about how to interpret or analyze the data obtained here
is it possible with 16s rRNA sequence?
No, it is not. The antiSMASH site only looks for Biosynthetic Gene Clusters (BGCs) that are responsible for producing secondary metabolites like antibiotics. The 16S gene does not encode secondary metabolites.
Thank you
Thank you so much for this video. can I use partial sequences for the analysis?
Sure, that is possible. However, they shouldn't be too short. For example, antiSmash won't be very useful if you use sequences in the kb range of a typical BGC (Biosynthetic Gene Cluster). Maybe restrict yourself to sequences that are a minimum of 0.25 - 0.5 Mb.
How to download BGC sequences annotations from antismash.. I am not getting sequences. Kindly help
Very informative. Can you advise why I am copying accession number of genome on NCBI, paste it on antiSMASH and receiving fail result?
I'm not sure why that is happening. When you get the failed message, it should also give you a short explanation of why it failed. See what that says - it might help.
Hi, Thanks but please what do you mean by the manual which explains the vocabulary like BGC?
I believe that is a reference to the Lab Manual that only the students in my class have access to. BGC stands for Biosynthetic Gene Cluster.
Is this good for secondary metabolite mining?
Thank you so much!
I am having issues with using this. I have downloaded some genomic FASTA .fna files from GenBank and I can't input them here. Any advice?
can you share another video about how to use it im having a problem to find the results i cant download a fasta formt file or enter the number from ncbi i need to understand this perfctly im presenting my seminar based on it thank u in advance
Very informative. Make some more video on usegalaxy
Thank you, i have been struggling with prokka all afternoon, and this video saved me a lot of headache
You're welcome Tamar, glad I could be of help!