UC Merced SCIF Stem Cell Instrumentation Foundry
UC Merced SCIF Stem Cell Instrumentation Foundry
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Tutorial on tSNE and FlowSOM Step-by-Step tool usage in FlowJo V10
This video describes how use tSNE and FlowSOM tools in FlowJo. It presents a step by step workflow on how to compare samples using these high dimensional analysis tools.
Sample files used and a step-by-step guide can be downloaded here:
ucmerced.box.com/s/e4i0vvrmrqch6i6798kke7unlwca8czq
Переглядів: 34 752

Відео

Daily startup and CST on BD LSR II Cytometer
Переглядів 7 тис.4 роки тому
This video describes the startup and performance check of the BD LSR II flow cytometer. This applies to weekend users.
Converting Text to a FCS File and Viewing in FlowJo
Переглядів 2,8 тис.5 років тому
This video describes how to take an image of text and convert it into an FCS file for an interesting effect.
Nikon confocal startup
Переглядів 4,1 тис.6 років тому
Simple startup of the Nikon confocal microscope located in SE1 379.
FACS Aria Fluidic Sensor Bypass
Переглядів 7396 років тому
This video describes how to bypass a FACS Aria fluidic sensor that is malfunctioning. This is critical because certain functions will not work if the instrument reads that tanks are empty. These parts are expensive to replace, and not particularly useful or necessary in my opinion.
Compensation of a 7 color panel on the BD LSR II
Переглядів 105 тис.7 років тому
This video describes the process of manual and auto compensation in BD FACSDiva on the LSR II.
BD FACS Aria startup procedure UC Merced
Переглядів 32 тис.7 років тому
This video shows how to set up a FACS Aria for sorting, which includes performing fluidics startup, setting up the stream, CS&T calibration, Accudrop delay, and setting side stream trajectories.
Dealing with a Clog on the BD LSR II Flow Cytometer
Переглядів 9 тис.7 років тому
This video describes the potential causes of clogs and sample uptake issues and provides some methods to remedy them.
Refilling Sheath Tank and Emptying Waste on BD LSR II Flow Cytometer
Переглядів 7 тис.7 років тому
This video describes filling the sheath tank and emptying the waste on the LSR II flow cytometer in the UC Merced Stem Cell Instrumentation Foundry (SCIF)
Running a Basic 2 color Flow Cytometry Experiment in BD FACS Diva
Переглядів 140 тис.7 років тому
This video describes how to set up an experiment in FACS Diva version 8.0 on an LSR II flow cytometer.

КОМЕНТАРІ

  • @jazmincastro9248
    @jazmincastro9248 Місяць тому

    I can't say enough, THANK YOU SO VERY MUCH for this!!!!! FANTASTIC video and explanation

  • @PoonamYadav-gh3fy
    @PoonamYadav-gh3fy 2 місяці тому

    I can not see tSNE plot option when I open the FLOWSOM window, I don't know what I am missing. Can anyone help?

  • @lillianliu2084
    @lillianliu2084 2 місяці тому

    Very nice video and clearly explained the basic operation of FACSDiva. Though I got trained by our core facility, your video made me less frustrated for learning to use this complex machine and software.

  • @DrShafi-xn6pk
    @DrShafi-xn6pk 2 місяці тому

    This is so far the best video I have seen on FACS DIVA to set an experiment, to set controls, and to resolve different populations

  • @laxmanegalitarian8581
    @laxmanegalitarian8581 3 місяці тому

    Man, you deserve to earn $150 for every full video watched. I literally took a 2 hours training on Flow Cytometry yesterday ($75 an hour, paid by the lab though) from some super speed instructor who would not wait for me to take notes even and learned literally nothing. As soon as you started explaining what all those windows were, I knew your video is going to be great. This must be the most beautifully explained video for flow cytometry on the internet. Thank you man, I wasted my lab's money yesterday and I am learning from you today. I will watch your next video on compensation too.

  • @LUCASFELIPEDEOLIVEIRA-j6o
    @LUCASFELIPEDEOLIVEIRA-j6o 4 місяці тому

    Very nice video! This is really helpful! Thanks a lot

  • @โสฐิดากาเหย็ม
    @โสฐิดากาเหย็ม 5 місяців тому

    thank you so much for good demonstration!!! Extremely helpful!!!

  • @RRR66620
    @RRR66620 6 місяців тому

    Great video!

  • @mermerrrrrrrrr
    @mermerrrrrrrrr 6 місяців тому

    very well explained...thank you so much

  • @swarnadipghosh1735
    @swarnadipghosh1735 6 місяців тому

    Very nice video. It was quite helpful. Thanks for sharing :)

  • @pingxue6245
    @pingxue6245 7 місяців тому

    Thank you for the video. Very helpful. I have a question: I ran a cancer patient tumor infiltrating lymphocytes sample with NK cells BV786 for single color control of my compensation panel, the positive and negative signals did not separate very well. How to define the positive peak for this kind of situation? Thanks!

  • @RossGuildmaster
    @RossGuildmaster 7 місяців тому

    Thank you so much for this tutorial! Really well explained and easy to follow!

  • @dotheneedful55
    @dotheneedful55 8 місяців тому

    Thank you soo very much! I have been searching forba clear cut explanation that isnt just someone explaining the theory.

  • @15837pawimomo
    @15837pawimomo 9 місяців тому

    Thank you for this really good tutorial :)

  • @prakritikarki3740
    @prakritikarki3740 11 місяців тому

    The best video for flow cytometry experiment found ever

  • @aragawgebeyehu8304
    @aragawgebeyehu8304 11 місяців тому

    Thank you!!!!!

  • @sohanaaktermina7057
    @sohanaaktermina7057 Рік тому

    Clear explannation

  • @tpankajavalli
    @tpankajavalli Рік тому

    Excellent demo! Extremely helpful, thanks for sharing this video!

  • @juanr859
    @juanr859 Рік тому

    Excellent presentation. It is clear, concise and engaging. I truly appreciate your willingness to share your expertise.

  • @avinashkumargudadurkalmath7368

    Send some traditional pigs from ur country i need to genes testing purpose

  • @avinashkumargudadurkalmath7368

    Can u tell this software name which is used by this machine

  • @starhopper457
    @starhopper457 Рік тому

    Well done, David. Sometimes it's easier just to manually check your tanks as well!!

  • @dongdongyan6579
    @dongdongyan6579 Рік тому

    Helpful to me

  • @davidepallucci2555
    @davidepallucci2555 Рік тому

    Did you perform automatic compensation before that or is it possible to set up a panel directly like that ? I suppose that automatic compensation is needed when you also need to titrate antibodies and decide voltages. By the way the a automatic process is the only way to tell the program about negative controls right ?

  • @Leria77
    @Leria77 Рік тому

    Awesome video! Please do more videos like this one; it's such great tutorial material. Thank you!

  • @preston1382
    @preston1382 Рік тому

    Thank you for being much more helpful than anyone in my lab or institution. Much appreciated 🙏

  • @hongxiachen778
    @hongxiachen778 Рік тому

    😀Very useful. Thanks,

  • @M_Alatawi
    @M_Alatawi Рік тому

    Many Thanks

  • @SajadAhmad-bi1fp
    @SajadAhmad-bi1fp Рік тому

    video quality is extremely poor so sad

  • @ritaturpin7121
    @ritaturpin7121 2 роки тому

    Thank you so much! This has been really helpful :) It was easy to follow. And I like that you explained the individual parts (tsne, FlowSOM) before showing the whole process merged together.

  • @jackwining1928
    @jackwining1928 2 роки тому

    Lovely presentation for the flow cytometry. It really helped me a lot. Many thanks.

  • @tranll1
    @tranll1 2 роки тому

    Thank you for the video ! This is very informative!!

  • @nabilahbaby6242
    @nabilahbaby6242 2 роки тому

    Thanks a lot! Very clearly explained...

  • @tillyfreeman5192
    @tillyfreeman5192 2 роки тому

    Please have more videos that walk us through as beginners how we use a cell sorter like Aria in cell analysis. This is, by far, the most detailed and best tutorial video I have ever watched on this instrument. Very thorough and detailed.

  • @tillyfreeman5192
    @tillyfreeman5192 2 роки тому

    Do you know where we can get a user manual for FacsAria, canto, lyric and LSR?

  • @tillyfreeman5192
    @tillyfreeman5192 2 роки тому

    Please make more videos. They are very detailed and very well explained. Thank you so much.

  • @tillyfreeman5192
    @tillyfreeman5192 2 роки тому

    Where do we get the user manual for this instrument?

  • @tillyfreeman5192
    @tillyfreeman5192 2 роки тому

    Hi, may I know the name and background of the presenter? Thank you. This video is so valuable!

  • @myrarosales2758
    @myrarosales2758 2 роки тому

    Thank you very much for this. Now I have to learn how to operate FacsCanto, FacsMelody,FacsLyric, LSR etc.

  • @ppsocal4596
    @ppsocal4596 2 роки тому

    One of UC Merced's strengths besides energy materials is stem cell research. Their facility is top notch!

  • @masoumehazimi3531
    @masoumehazimi3531 2 роки тому

    thanks alot for your great and practical tric🙏🏻🙏🏻, you can either put a small fixed thing instead of a spring for passing this error

  • @scientia_potentia_est
    @scientia_potentia_est 2 роки тому

    Thanks for the tutorial! Very clearly explained! One question about comparing FlowSOM population frequencies. Let's say I have a control and a treatment group, with 5 samples in each group. I create a single concatenated file with all 10 samples, then separate each sample using sample ID gates, and then run FlowSOM on that whole concatenated file. Then I drag and drop the created FlowSOM population gates onto each one of the Sample ID gates. My question is: Can I then run a simple two-tailed t-test to compare the frequency of a given flowSOM population between control and treatment samples? Would that be statistically valid/"legal"?

    • @be0conected
      @be0conected 10 місяців тому

      Great question.. wouldlove to know this too

    • @flasardela
      @flasardela 5 місяців тому

      I have the same question!

  • @karthikeyanbio
    @karthikeyanbio 2 роки тому

    Thanks bro. This really helped a lot.

  • @xinyiwang2956
    @xinyiwang2956 2 роки тому

    Thank you!!! That makes sense for the beginner!

  • @Sama-sf4sy
    @Sama-sf4sy 2 роки тому

    Thank you so much. It's very useful!

  • @martynalukoseviciute5564
    @martynalukoseviciute5564 2 роки тому

    It is a great tutorial! Well explained, moving with good speed and presented in a very logical fashion. Thank you so much!

  • @kimle7049
    @kimle7049 2 роки тому

    Thank you for such a great video! I am learning flow cytometry and this helps a lot

  • @kimle7049
    @kimle7049 2 роки тому

    When you ran the compensation, did you run Low or High? And also for the cells? Thanks

  • @phucleminh8220
    @phucleminh8220 2 роки тому

    Character In the video It's great, I like it a lot $$

  • @hoado8603
    @hoado8603 2 роки тому

    The video sound is pretty good, beyond my imagination