Відео

Speaker: Pablo Loza-Alvarez, ICFO Barcelona

Extract of ImageInLife online dissemination conference Speaker : Roeland Merks

Extract of the ImageInLife final online conference Speaker : Jean-Pierre Levraud, group leader at Pasteur institute Group research focus : Response to Infection in the Whole Organism

Extract of the final ImageInLife online conference Speaker : Radoslaw Gora, PhD student at Leiden University, Netherlands

Extract of the final ImageInLife dissemination conference. Former ESR Laurent Thomas introduces open source software tools developed during his PhD including object-detection with multi-template matching, and #ImageJ/#Fiji plugins for image-annotations. Multi-Template Matching multi-template-matching.github.io/Multi-Template-Matching/ Category annotations with ROI in ImageJ/Fiji f1000research.c...

Modelling is a new and important tool in understanding pathogens interaction with the host and identify new variables. In this video we will introduce the advantages of mathematic modelling applied to host-pathogen interaction. We will pay particular attention to the model Zebrafish, a model already affirmed in development and drug discovery, but that can synergize with the modelling and open n...

In this video, we make a case study of modelling the formation of multicellular rosettes using a deformable cell model.

The opening video to the Week 5 of ImageInLife MOOC.

In this video, we introduce the roles of mathematical and computational modelling in the context of biological development. Next, we give an overview of the different modelling techniques currently in use in the field.

In this video, we first review the experimental requirements when imaging with a microscope a time-lapse for object-tracking. The basics of object and particle tracking over time are also introduced. Finally, we illustrate manual tracking on an example image and review some tools available for automated tracking.

In this video, we explain the concept of image segmentation, especially using thresholding techniques. Further, we explain how the thresholding techniques work in detail using a manual way in a software Gimp. In addition, the segmented results from automatic thresholding techniques are briefly shown.

In this video, we will teach you about image data and handling of the data. These will include file formats, choosing the correct file format and what corresponding metadata to store along with the image data. Finally we shall discuss copyrights and why they are important when handling image data.

In this video, we review a selection of software dedicated to bioimage analysis. Each of them has a dedicated website with documentation. Video tutorials are also available on UA-cam for some of them. And here again the links to the bioimage analysis forum: forum.image.sc, and microscopy instrumentation forum: forum.microlist.org.

This video tutorial explains how images from a microscope are represented in a computer. We introduce the notion of pixel, image bit depth, look up table and display range. We also discuss multi-dimensional images such as time-lapse acquisition.

ImageInLife MOOC: Opening Week 4

3.6 Light Sheet Microscopy

3.5 Introduction to Single-Molecule Microscopy: TIRF

3.4 Confocal microscopy

3.3 Widefield microscopy

3.2 Introduction to microscopy

3.1 Image forming process

ImageInLife MOOC: Opening Week 3

2.4 Photoconversion

2.6 In situ hybridization

2.5 Immunostaining & Chemical Dyes - Principles and techniques

2.3 Zebrafish transgenesis

2.1 Fluorescence

2.2 Taking advantage of live dyes

ImageInLife MOOC: Opening Week 2