This is brilliant thank you! I am struggling with my bachelor thesis because I don't know how to visualize my data because there are so many ways and this gives me a great overview of what is important!
Thanks for the video, it is really useful!! It would have been nice if you showed the imported count_table like you did with the taxonomy file because you used a final.full.count_table that is not produced with the Mothur SOP, is it?? I think a few of us are struggling with the comment lines in the count_table in mothur. Any advice is greatly appreciated 🙃
Great presentation. I just want to know how you imported the files into RStudio. I have Galaxy files and I am still struggling with Rstudio to have a good visualization.
Hi, there were a few errors in the code which I can't find solutions to online: Error in read_delim("final.full.count_table", delim = "\t", escape_double = FALSE, : could not find function "read_delim" Warning in install.packages : package ‘ggtree’ is not available for this version of R Warning in install.packages : package ‘treeio’ is not available for this version of R If anyone has experience with these issues, please comment
Thank you very much. How do you import your files to Rstudio? As you said we have three files by name final. I would really appreciate it if you assist
Depends on which command you are running on and which stages are you in during the analysis. If you already have a table dplyr::filter () will work just fine :)
This is brilliant thank you! I am struggling with my bachelor thesis because I don't know how to visualize my data because there are so many ways and this gives me a great overview of what is important!
Thanks for the contents❤ Galaxy and Megan just blew my mind!!! Have done most of the visualizations on plotting softwares until now 😬
Nice video. It will be amazing if you make a video about create nice graphs using phyloseq.
Thanks for the video, it is really useful!! It would have been nice if you showed the imported count_table like you did with the taxonomy file because you used a final.full.count_table that is not produced with the Mothur SOP, is it?? I think a few of us are struggling with the comment lines in the count_table in mothur. Any advice is greatly appreciated 🙃
Great presentation. I just want to know how you imported the files into RStudio. I have Galaxy files and I am still struggling with Rstudio to have a good visualization.
ATAC seq and CHIP-seq please ❤️❤️❤️, but great video bro ❤️❤️❤️
Great video!
Thank you a bunch . please I need you help about this segment of code
count_high 100,]
count_high2
thank you very much,
what if i am not using Miseq particularly?
Hi, there were a few errors in the code which I can't find solutions to online:
Error in read_delim("final.full.count_table", delim = "\t", escape_double = FALSE, :
could not find function "read_delim"
Warning in install.packages :
package ‘ggtree’ is not available for this version of R
Warning in install.packages :
package ‘treeio’ is not available for this version of R
If anyone has experience with these issues, please comment
Great video. You have video of how to create primers?
Thank you very much. How do you import your files to Rstudio? As you said we have three files by name final. I would really appreciate it if you assist
kindly tell me which command is used to separate taxonomy into kingdom, phylum, class, order, genus and species
Depends on which command you are running on and which stages are you in during the analysis. If you already have a table dplyr::filter () will work just fine :)
I don't see the github page in your description!
Oops, just added that. You should be able to find it now
@@LiquidBrain Thank you!!
p͓̽r͓̽o͓̽m͓̽o͓̽s͓̽m͓̽ 🌟