Thank you for such an informative video professor. Can you make a short video on GWAS of cattle/Goat, like which is the best tool to use. I'm using PLINK for association of quantitative phenotypes with genotype data but I'm so much unsure of the results like how to set the threshold and if those results are correct or not. Thank you again.
Hi, a GWAS video using GEMMA is being prepared. In short: 1) you need to make sure you use some form of population structure correction 2) you use some kind of significance threshold - e.g. the Bonferroni correction is quite common
Great, all are good.
Thank you for such an informative video professor.
Can you make a short video on GWAS of cattle/Goat, like which is the best tool to use. I'm using PLINK for association of quantitative phenotypes with genotype data but I'm so much unsure of the results like how to set the threshold and if those results are correct or not. Thank you again.
Hi,
a GWAS video using GEMMA is being prepared.
In short:
1) you need to make sure you use some form of population structure correction
2) you use some kind of significance threshold - e.g. the Bonferroni correction is quite common
Thank you very much professor. Can you make a video on Genomic Prediction (GBLUP) on R. As an extension to GP tour video.
Thank you professor.
Thank you for the suggestion! This is something that might come, but not in the very near future.