Multiple Sequence Alignment using R

[@Lamothe.Bioinformatics-gj6xn]

when it says 'pdflatex is not available', how do you reconcile that?

[@Bioinformatics_Made_Easy]

msa package provides a unified R/Bioconductor interface to different multiple sequence alignment algorithms. Currently, ‘ClustalW’, ‘ClustalOmega’, and ‘MUSCLE’ are supported. All algorithms are usable without additional software packages and on all major platforms.
You will find reference here www.rdocumentation.org/packages/msa/versions/1.4.3/topics/msa-package

[@winniefrimpong]

How did you get the Clustalw

[@Bioinformatics_Made_Easy]

www.rdocumentation.org/packages/msa/versions/1.4.3/topics/msa-package

[@saeedjaanz]

You can call or declare the ClustalW object/function in the code. R will tell you the rest.