Applied Computational Genomics - 14 - Real-world analyses with bedtools

From Aaron Quinlan's course on Applied Computational Genomics at the University of Utah (github.com/qui.... This lecture covers how to use bedtools to conduct several real-world analyses of genomic data sets.

[@dayou8426]

Hey, Can I ask a stupid question? When using the bedtools intersect to find the overlap of two bed files, I wonder which command can produce an actual file (in bed format), not just shown on the terminal?

[@reeceakana1322]

You can just redirect the output to a bed file using ">". For instance "bedtools intersect -a A.bed -b B.bed > result.bed"