ANOVA Part IV: Bonferroni Correction | Statistics Tutorial #28 | MarinStatsLectures
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- Опубліковано 3 жов 2024
- ANOVA & Bonferroni Correction for Multiple Comparisons: What is Bonferroni’s Correction and When Do We Use It? 👉🏼 ANOVA with R Tutorial: (goo.gl/kY4kyE); ANOVA Complete Video Tutorials (bit.ly/2zBwjgL); 👍🏼Best Statistics & R Programming Language Tutorials: ( goo.gl/4vDQzT )
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In this ANOVA video tutorial, we learn about Bonferroni's multiple testing correction (Bonferroni Correction) for Analysis of Variance (ANOVA). When comparing multiple groups, if the null hypothesis is rejected (with a small p-value), the conclusion is that there is evidence that at least one of the means differs from the rest, but there is no indication of which differ from others. To decide which we believe differ, we can conduct "multiple comparisons" of all pairwise sets of means.
While working through an example with multiple comparisons, we will see that because we are making multiple comparisons at once, the chance of making a type I error (false positive) increases. Also called family-wise error rate (FWER), this is the probability of at least one type I error (at least one false positive) when performing multiple hypotheses tests.
Bonferroni proposed a method to correct the inflated type I error rate. Bonferroni assumes that all pairwise tests are independent. This may not be true, but as we will see in this video, independence makes calculations simpler and it is also a bit more conservative. Bonferroni’s approach is to use an adjusted alpha level. The Bonferroni correction sets the significance cut-off for each test at (α/# of tests), in order to have an overall type I error rate of approximately α (alpha).
While Bonferroni's method is not necessarily the `optimal' correction to use, it is easy to understand, and it is conservative. Other methods of correction for multiple comparisons do exist, Tukey's or Dunnett's, for example. They are all based on the same concept, so once you understand Bonferroni's correction, you will be able to understand the concepts behind the other options.
▶︎ The purpose of ANOVA: One Way Analysis of Variance (ANOVA) is used to compare the means of 3 or more independent groups.
▶︎ ANOVA test Assumptions: The ANOVA test requires assuming independent observations, independent groups, that the variance (or standard deviation) of the two groups being compared are approximately equal or that the sample size for each group is large
▶︎▶︎ Watch More
▶︎ Analysis Of Variance ANOVA in R, Multiple Comparisons in R, Kruskal Wallis in R goo.gl/kY4kyE
▶︎ANOVA: Use and Assumptions • One Way ANOVA (Analysi...
▶︎ ANOVA: Understanding Sum of Squares • ANOVA (Analysis of Var...
▶︎ ANOVA: Bonferroni Multiple Comparisons Correction • ANOVA Part IV: Bonferr...
▶︎ Two Sample t test for independent groups • Two Sample t-test for ...
▶︎ Paired t test • Paired t Test | Statis...
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Thanks for watching! Have fun and remember that statistics is almost as beautiful as a unicorn!
Thanks! you should create a course on udemy, i would certainly be willing to pay for your services
Thanks! We don’t want to force people to pay for learning, but we do accept donations...you can finds links to donate on our “about” channel page: ua-cam.com/users/marinstatlecturesabout
We appreciate any donations we receive, and they help fund creation of even more content :)
@@marinstatlectures ❤
You are the best statistics instructor I have found on youtube (and beyond)! Thank you
I didn't think it was possible to rely on one's intuition when studying statistics -- thankfully you proved me wrong sir. This channel is the GOLD standard for statistics.
I ended up mesmerized by how you were writing backwards so easily.
mirror the footage?
Thank you so much from Barcelona Mike. I'm learning A LOT with your lessons. You are great.
thanks!
very good tutorial on Annova, after searching and viewing many other tutorials I found this one as best explaining ANNOVA
best explanation on this topic on youtube hands down
thanks @Aditya Chourasia! glad you found the video helpful!
Awesome representation of the linerity in regression,the more the event occurs the last portion of the resudual from universal set provides o significance in the risk reduction.
thank you so much, great teaching.
Thank you very much. The Greatest video I ever watch.
Thank you so much for your videos!
Thanks a lot for these vedios.Love from India
I think that all your classes builded completely my basic concepts about statistics, thank you so much!
Are you planning to explain a little bit about Tukey's test?
Thanks!!
Hi, we appreciate that! probably wont explain much more about the test, other than that it is on (or many possible) used for multiple testing corrections
Thanks for helping me understanding this!
Thank you for your great explanation.
you're welcome
Fantastic presentation!
In this #ANOVA video tutorial, we learn about Bonferroni's multiple testing correction (#Bonferroni Correction) for Analysis of Variance (ANOVA)while working through an example with multiple comparisons. When comparing multiple groups, if the null hypothesis is rejected (with a small p-value), the conclusion is that there is evidence that at least one of the means differs from the rest, but there is no indication of which differ from others. To decide which we believe differ, we can conduct "multiple comparisons" of all pairwise sets of means.
👉🏼Find our complete ANOVA Video Tutorials here (bit.ly/2zBwjgL); 🎗 Like to support us? You can Donate (bit.ly/2CWxnP2), Share our Videos, Leave us a Comment, Give us a Like or Write us a Review! Either way, We Thank You
Great explanations aside, his backward writing is very impressive!
very clear and helpful explanation, thank you!
You are very welcome! glad you found the video helpful!
Brilliant!
Excellent video, thank you!! Drop my like over here
Dear Mike, could you make a video including the other post hoc analyses like LSD, Tukey, Duncan, Dunn, etc, and when we need to use them?
Great explanation! If I ran 6 times two-way ANOVAs (6 DVs) to test 3 hypotheses. Do I correct for each hypotheses (divided by 3) or correct all of it (divided by 6)?
your videos were very helpful in understanding the ANOVA concepts that I was having a trouble with in understanding .. I have a request,,, Can you post a video about Extra sum of square , comparing two models (Full and reduced model )
Sure, we have a video explaining that here: ua-cam.com/video/G_obrpV70QQ/v-deo.html
@@marinstatlectures thank you 🙏
Thanks for the great series. Is there going to be any multivariate statistics in the future?
that depends a bit on what you mean by "multivariate", as people use the word to mean different things. we will be adding videos for multivariable regression modelling soon (so, multiple Xs: X1, X2,...,Xk)...we wont be adding multivariate in the sense of multiple Y's (Y1, Y2,...)
[Sung to the tune of "My Sharona," by The Knack]
Testing for significance, significance,
Hypotheses as numerous as Rice-a-Roni!
First apply this correction, this correction,
Or you'll find that your conclusions are errone-
ous.
Ooh... B-b-b-bonferroni!
B-b-b-bonferroni!
B-b-b-bonferroni!
Plzzzz make some video on 01~one way anova,
02~two way anova without replication and
03~two way anova with replication i.e. equal number of observations per cell in R with proper real life examples..........🙏🙏🙏
Also on CRD, RBD and LSD in R.
Though your videos are very good!
we likely won't make any videos on two-way ANOVA as it's not particularly useful in my opinion. you can get the same, and more, by just fitting a regression model that includes the two factors as x-variables. that is the way i teach it in my classes, and we really only present ANOVA as sort of a stepping-stone up to regression models.
Loved your video! Made this concepts for me, a chemist, very simple! Thank you! From a teaching perspective, may I ask what type of markers and board you used to make your video? I would love to do something similar with my chemistry lectures this fall. The lighting looks tricky to pull off. Thanks for any information!
The idea is actually quite doable to build yourself (I created these with a Lightboard at UBC studios)
Rather than provide a lengthy explanation, I’ll just suggest to search “DIY Lightboard”. And you can buy neon whiteboard markers...make sure to get those to really make the text pop out.
Good luck with online teaching...gonna be a challenge for us all :)
@@marinstatlectures Thank you!! ❤️
Why you stopped uploading videos?
this guy is such a gangster
Thanks for your wonderful videos...
two quick questions...
when calculating the SE, why do we take the unexplained variance instead of the regular formula that has been given for variance when we assume that the variance is equal?
that would be then ((n-1)(standard_deviation1)**2 + (n2-1)(standard_deviation1)**2) / (n1+n2-2)
that gives me a different output: close to 6.29
what did I miss?
or have I misunderstood it?
and how did you calculate the t/z value as 2.73...
if I take degrees of freedom as 28 and put the value as 0.0083, I get 2.54 (in python), am I missing something?
Great video, thanks! I get the Fstat and the new alpha, but, in my head at least, there is a bit of a jump between the new alpha and the CI formulas that pop up in the white box. Where do I apply the new alpha? Where do the numbers from the CI formula come from? Thanks!
Specifically the 2.735 and the 5.303
@@nikphatslap I see that the unexplained variance is the same as 5.303, I believe that is where it comes from...
Although I am not able to figure the t-score for .00833 being 2.735
CI = mean - t +- zscore * SE
SE = standard_deviation / sqrt(n)
or variance / n
pooled variance = (n-1)(sd**2) + (n2-1)(sd2**2) / (n+n1-2)
and SE then would be (pooled_variance / n) + (pooled_variance / n)
so I am lost a bit too... did you find the answer to your question?
You aren’t applying the alpha so to speak, you’re using that new alpha to determine your new critical t-value. The interval is now 99.16% instead of 95 because alpha changed from .05 to .0083. The critical t value for the df for that test was 2.735. The 5.3 is the mean square error, you’re basically pooling your error variance.
39min 10k is rapid!
I really suggest you to just use a real black background