Want to correct myself at 33:35 - CNV calling using the tool from 2011 works in Nijmegen quite OK because it is run in a very uniform setting, so my remark "it is bad it is terrible" was more about the new labs that will try to use outdated tools just setting up their pipelines in 2024. If something works for years and works satisfactory, indeed, there is no need to change it.
Want to correct myself at 33:35 - CNV calling using the tool from 2011 works in Nijmegen quite OK because it is run in a very uniform setting, so my remark "it is bad it is terrible" was more about the new labs that will try to use outdated tools just setting up their pipelines in 2024. If something works for years and works satisfactory, indeed, there is no need to change it.