Hi, yet another great tutorial. I enjoy your tips and tricks like the saving of multiple plots at once. You also briefly covered ggarrange() and I think it would be cool if you someday did a brief tutorial on publication tips and tricks (specifically for figures and also maybe a project framework flowchart type figure) that you have used or wish you would've known about sooner. I really like the pathway map too and would be really interested to see more on that and how to get a more concise map. Thanks and I will keep an eye out for your new uploads!
Hi! Thanks so much for your comment, your feedback inspired me to create a 'ggplot2 tricks & tips' video (at least part 1!). You can have a look here: ua-cam.com/video/RMjbSn4dtKw/v-deo.html Hope you like it!!
Hello thank you for the tutorial I have GSEA results and have no idea how to calculate and add the generatio and bgratio. I was wondering if you can explain a bit more about this part
I have a small doubt, hope you can clarify. I began splitting my differentially expressed genes df as upregulated or downregulated into 2 new dfs using tibble and dpylr, and then I saw your video on creating sub-dfs .. but I am not able to follow that part fully. But I could create my bg gene with terms and get the cluterprofiler step running! I did this : loaded_data_GOBP
Hello, teacher. Why not set ontology = "Reactome" in the new function? Thanks so much.
Thank you so much! Every single video is so helpful!
Thank you very much for your easy-to-follow tutorial! I think you forgot the put the code "enrichres
Hi! A big thanks for your comment and for pointing that out for me!! I just added the extra snippet to the webpage:)
@@biostatsquid You're very welcome and thank YOU too!
Hi, yet another great tutorial. I enjoy your tips and tricks like the saving of multiple plots at once. You also briefly covered ggarrange() and I think it would be cool if you someday did a brief tutorial on publication tips and tricks (specifically for figures and also maybe a project framework flowchart type figure) that you have used or wish you would've known about sooner. I really like the pathway map too and would be really interested to see more on that and how to get a more concise map. Thanks and I will keep an eye out for your new uploads!
Hi! Thanks so much for your comment, your feedback inspired me to create a 'ggplot2 tricks & tips' video (at least part 1!). You can have a look here: ua-cam.com/video/RMjbSn4dtKw/v-deo.html
Hope you like it!!
Nice video! I could not understand what # Substitute names so they are annotated nicely in the heatmap later
df$diffexpressed
Hello thank you for the tutorial I have GSEA results and have no idea how to calculate and add the generatio and bgratio. I was wondering if you can explain a bit more about this part
I have a small doubt, hope you can clarify. I began splitting my differentially expressed genes df as upregulated or downregulated into 2 new dfs using tibble and dpylr, and then I saw your video on creating sub-dfs .. but I am not able to follow that part fully. But I could create my bg gene with terms and get the cluterprofiler step running! I did this : loaded_data_GOBP
Hi, thanks for the this great video, I only have genes list and I just want to cluster kegg pathways into similar pathways, how can we do that ?
Can you do a video for pathway enrichment analysis using pathfindR package in R
Super cool video! Can you explain EnrichR in a different video?
Great suggestion!:) I have a few more videos coming up soon but will add it to the list;)