Great question! Created this blogpost inspired by your question, I've definitely had to italicize parts of my titles or labels in my R plots: biostatsquid.com/easy-italics-plots-r/
Hi, thank you so much for the video. Have you ever tried to add a quantitative scale, as an annotation, to the dendrograms, where we can see the % at which the different branches separate? Thank you!
Thank you a lot! I'm struggling with my data. is there any option to create a clustering within a group on the same heatmap? I have many groups of species I want to analyze but I just want the clustering only within the same group.
I have a question that is off topic, but id be interested to hear your opinion. Its about the metric system; what do you yhink about the kilogram being replaced by the metric pound? The metric pound is equal to half a kilo making it 10% heavier than an imperial pound. So the benefit would be twice the predecimal precision of the kilo while still being utilizable in the metric system. Also, its currently used as an informal unit in Germany and the Netherlands.
Hi! Thanks for your comment! Could you explain a bit more, what do you mean by 'from bottom to top'? You mean the labels for the Samples in our case, right?
@@rajeevmeora8466 Unfortunately, I think it's not possible to do that using pheatmap(). You can, however, do it easily enough with R package ComplexHeatmap(). stackoverflow.com/questions/63290621/can-i-change-the-column-names-to-the-top-in-pheatmap PS. ComplexHeatmap() allows for much more customisation so if you'd like a tutorial let me know!
@@biostatsquid Thank you for the response and I appreciate it. I agree on the fact that pheatmap doesn't provide such an option. And yes, I would love to watch a complete tutorial on ComplexHeatmap.
Hi, thanks for your video! Do you know how to italicize the x and y labels (for example, the gene names)? Could you please help me with that?
Great question! Created this blogpost inspired by your question, I've definitely had to italicize parts of my titles or labels in my R plots: biostatsquid.com/easy-italics-plots-r/
Fantastic video! I've been searching for a way to do this for hours and then you gave me almost all answers! Big thank you!
I love pheatmap!! is my number one choice everytime I want to do heatmaps ! Thanks for the video 🥰
Thanks for the video got to annotate my own heatmap because of you. Thank you so much.
Such a nice and informative video, you should do more for sure it is great and amazing
You are such a saviour!😭🙏
Hi, thank you so much for the video. Have you ever tried to add a quantitative scale, as an annotation, to the dendrograms, where we can see the % at which the different branches separate?
Thank you!
Simple and helpful, Loved it
Your videos are awesome!❤❤
you are absolutely awosome .. thank you
Thanks for the video :)
Thank you a lot! I'm struggling with my data. is there any option to create a clustering within a group on the same heatmap? I have many groups of species I want to analyze but I just want the clustering only within the same group.
I have a question that is off topic, but id be interested to hear your opinion. Its about the metric system; what do you yhink about the kilogram being replaced by the metric pound? The metric pound is equal to half a kilo making it 10% heavier than an imperial pound. So the benefit would be twice the predecimal precision of the kilo while still being utilizable in the metric system. Also, its currently used as an informal unit in Germany and the Netherlands.
Hi! Thanks for this informative video. I'm curious to know if there's an option to set x-axis labels (text labels for columns) from bottom to top.
Hi! Thanks for your comment! Could you explain a bit more, what do you mean by 'from bottom to top'? You mean the labels for the Samples in our case, right?
@@biostatsquid Thanks for your response. Yes, you are correct. I want samples' names on the top of the heatmap.
@@rajeevmeora8466 Unfortunately, I think it's not possible to do that using pheatmap(). You can, however, do it easily enough with R package ComplexHeatmap(). stackoverflow.com/questions/63290621/can-i-change-the-column-names-to-the-top-in-pheatmap
PS. ComplexHeatmap() allows for much more customisation so if you'd like a tutorial let me know!
@@biostatsquid Thank you for the response and I appreciate it. I agree on the fact that pheatmap doesn't provide such an option. And yes, I would love to watch a complete tutorial on ComplexHeatmap.
Thanks for the kind tutorial. The fonts in the video are not very clear. try to upload HD video
Hi, thanks so much for your feedback! Will do for the next one:)
Annotation-col is not working, how do i solve it?
First
promo sm ⭐