MetaAmp - Generate summary for different taxonomic levels using excel

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  • Опубліковано 16 гру 2024
  • This quick tutorial by Manuel Kleiner describes how one can generate summary tables for different taxonomic levels in Excel using the OTU data table output from MetaAmp (ebg.ucalgary.ca.... The starting table lists a set of OTUs, counts and relative abundances for these OTUs in different samples and a taxonomic classification of the OTUs in form of a taxonomy string. After doing the steps in the tutorial you will end up with a table that lists the summmed counts or relative abundances for taxonomic groups on different levels e.g. phylum level.

КОМЕНТАРІ • 3

  • @hushgamer92
    @hushgamer92 2 роки тому

    Words cannot describe my gratitude for you. I literally had to copy the taxonomy and pasted it on the same file and manually summing up the common matches which took days to complete. Your video literally saved me from exhaustion and time and gave a sense of relief. Your above video truly impacted me in a big way since there was no one to teach me on how to summarize OTUs. I truly thank you with my whole heart for this. Keep up the good work :D

  • @AngelGlezChannel
    @AngelGlezChannel 2 роки тому

    Omg thank you😭🫶🏻

  • @monzurmorshed.
    @monzurmorshed. 2 роки тому

    Thanks a lot!