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ELIXIR-UK
United Kingdom
Приєднався 9 бер 2021
ELIXIR-UK supports the life science research community by providing training and services to help them discover, distribute, analyse, and store data, exchange expertise and agree on standard approaches.
This channel hosts explainer videos, presentations and training material.
This channel hosts explainer videos, presentations and training material.
ELIXIR-UK Training Club Call – The ELIXIR-GOBLET Train-the-Trainer: programme and courses
With Patricia Palagi. She leads the Swiss Institute of Bioinformatics (SIB) Training Group, where her team coordinates training activities with Swiss and international partners. With over 18 years of experience managing international, multi-institutional projects, Patricia specialises in curriculum design and scientific training for bioinformatics and life sciences. She is also a co-creator and leader of the successful ELIXIR-GOBLET Train the Trainer (TtT) programme, fostering a global network of trainers who benefit from community support and knowledge exchange.
Patricia will introduce the TtT programme in her talk, focusing on ways to engage with the community and highlighting a new mentorship scheme.
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If you want to join any of our future Calls, subscribe to join our Training Club elixiruknode.org/activities/uk-training-club/
Patricia will introduce the TtT programme in her talk, focusing on ways to engage with the community and highlighting a new mentorship scheme.
__________
If you want to join any of our future Calls, subscribe to join our Training Club elixiruknode.org/activities/uk-training-club/
Переглядів: 15
Відео
ELIXIR-UK Human Data Community Call - Exploring WES and WESkit Implementation
Переглядів 42Місяць тому
Sven Twardziok, Group Leader of Data Management at Berlin Institute of Health at Charité, presents recent developments around the Workflow Execution Service (WES) and WESkit, providing insights into their implementation and how they integrate with other GA4GH standards, particularly the Task Execution Service (TES). To join future calls, subscribe to the ELIXIR-UK Human Data Community to receiv...
ELIXIR-UK RDM Club Call - Elevenses and data horror stories
Переглядів 20Місяць тому
ELIXIR-UK RDM Club Call - Elevenses and data horror stories
ELIXIR-UK Training Club Call - Galaxy Training Network and accessibility
Переглядів 13Місяць тому
With Helena Rasche training.galaxyproject.org/training-material/hall-of-fame/hexylena/ If you want to join any of our future Calls, subscribe to join our Training Club elixiruknode.org/activities/uk-training-club/
RDMbites | EDIJ and decolonisation in data management: why should I care?
Переглядів 337 місяців тому
Relevant links: AfricArXiv website: africarxiv.pubpub.org/decolonising-scientific-writing-for-africa Africa Connect website: africaconnect3.net/the-road-towards-a-more-prosperous-future-education-and-training-sdg-8/ Afrike research website: www.aphrikeresearch.com/ American Ornithological Society (2023). American Ornithological Society Will Change the English Names of Bird Species Named After P...
RDMbites | Decolonising data management in the biosciences
Переглядів 447 місяців тому
Relevant links: AfricArXiv website: africarxiv.pubpub.org/decolonising-scientific-writing-for-africa Africa Connect website: africaconnect3.net/the-road-towards-a-more-prosperous-future-education-and-training-sdg-8/ Afrike research website: www.aphrikeresearch.com/ American Ornithological Society (2023). American Ornithological Society Will Change the English Names of Bird Species Named After P...
RDMbites | Data management and disabilities
Переглядів 227 місяців тому
Relevant links: Universal Design website: universaldesign.ie/what-is-universal-design/definition-and-overview/ Creators: Ciara Loughrey (orcid.org/0000-0002-2295-1320) Reviewers: Allyson Lister (orcid.org/0000-0002-7702-4495), Wendi Bacon (orcid.org/0000-0002-8170-8806) The RDMbites are funded by the ELIXIR-UK: FAIR Data Stewardship training UKRI award (MR/V038966/1) 00:00 Learning objectives 0...
RDMbites | EDIJ and decolonisation in data management
Переглядів 347 місяців тому
Relevant links: AfricArXiv website: africarxiv.pubpub.org/decolonising-scientific-writing-for-africa Africa Connect website: africaconnect3.net/the-road-towards-a-more-prosperous-future-education-and-training-sdg-8/ Afrike research website: www.aphrikeresearch.com/ American Ornithological Society (2023). American Ornithological Society Will Change the English Names of Bird Species Named After P...
RDMbites | Why share your data?
Переглядів 857 місяців тому
Relevant links: Slide 4 (Continuum of Data Sharing [1]) doi.org/10.31234/osf.io/w8xs2 Slide 9 (What if I can’t openly share my data?) Image credit: European Commission, Directorate-General for Research and Innovation, (2018). Turning FAIR into reality: final report and action plan from the European Commission expert group on FAIR data, Publications Office. data.europa.eu/doi/10.2777/1524 Creato...
RDMbites | FAIRification: a case study
Переглядів 197 місяців тому
Relevant links: 1. Corona Accelerated R&D in Europe (CARE): www.imi.europa.eu/projects-results/project-factsheets/care 2. FAIR Data Maturity Model: specification and guidelines: zenodo.org/records/3909563 3. Dataset pre-assessment results: fairplus.github.io/fairification-results/2021-07-20-CARE-pre-assessment/ 4. Dataset post-assessment results: fairplus.github.io/fairification-results/2021-10...
RDMbites | FAIRification tools and templates
Переглядів 147 місяців тому
Relevant links: 1. Dataset Maturity (DSM) Model: fairplus.github.io/Data-Maturity/ 2. FAIR Cookbook DSM recipe: faircookbook.elixir-europe.org/content/recipes/maturity.html 3. Recommendations for Minting Persistent and Resolvable Identifiers: docs.nih-cfde.org/en/latest/the-fair-cookbook/content/recipes/Identification/pids/ Creators: Lijing Lin (ororcid.org/0000-0003-3355-8812) Reviewers: Nick ...
RDMbites | FAIRification framework: the process
Переглядів 197 місяців тому
Relevant links: 1. DSM model: fairplus.github.io/Data-Maturity/ 2. DSM recipe: faircookbook.elixir-europe.org/content/recipes/maturity.html Creators: Lijing Lin (orcid.org/0000-0003-3355-8812 ) Reviewers: Nick Juty (ororcid.org/0000-0002-2036-8350) The RDMbites are funded by the ELIXIR-UK: FAIR Data Stewardship training UKRI award (MR/V038966/1) 00:00 Learning objectives 00:34 Graphical Overvie...
RDMbites | What is FAIRplus and the FAIRification framework
Переглядів 257 місяців тому
Relevant links: 1. Katarzyna Kamieniecka, Krzysztof Poterlowicz, FAIR in a nutshell (Galaxy Training Materials). training.galaxyproject.org/training-material/topics/fair/tutorials/fair-intro/tutorial.html Online 2. FAIRplus: fairplus-project.eu 3. Innovative Medicines Initiative (IMI): www.imi.europa.eu Creators: Lijing Lin (orcid.org/0000-0003-3355-8812 ) Reviewers: Nick Juty (orcid.org/0000-0...
RDMbites | Analysis Organisation
Переглядів 2811 місяців тому
Relevant links: Human and machine-readable file naming: ua-cam.com/video/rNXBaoYrEwg/v-deo.html Characters to use and avoid in filenames: ua-cam.com/video/dLziBlI2qlo/v-deo.html Creators: Phillip Crout (orcid.org/0000-0001-5754-0938 ) Reviewers: Robert Andrews (orcid.org/0000-0002-3491-2361) The RDMbites are funded by the ELIXIR-UK: FAIR Data Stewardship training UKRI award (MR/V038966/1) 00:00...
RDMbites | RNAseq data submission: ArrayExpress
Переглядів 5411 місяців тому
Relevant links: RDMbite “High-throughput sequencing data repositories”: ua-cam.com/video/ZoU4R3xVn3o/v-deo.htmlsi=NfD_FWIW7CNZV-1- MIAME: www.fged.org/projects/miame/ MINSEQE: www.fged.org/projects/minseqe/ Submitting data to ArrayExpress: www.ebi.ac.uk/training/online/courses/array-express-quick-tour/submitting-data-to-arrayexpress/ Accepted Raw data formats: www.ebi.ac.uk/fg/annotare/help/acc...
RDMbites | Metadata: where to find published ontologies
Переглядів 5111 місяців тому
RDMbites | Metadata: where to find published ontologies
RDMbites | High-throughput sequencing data repositories
Переглядів 1511 місяців тому
RDMbites | High-throughput sequencing data repositories
RDMbites | Making code available in a repository
Переглядів 3111 місяців тому
RDMbites | Making code available in a repository
RDMbites | Package and environment management systems
Переглядів 2011 місяців тому
RDMbites | Package and environment management systems
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
Переглядів 2911 місяців тому
RDMbites | Improve your analysis reproducibility and data provenance with computational notebooks
RDMbites | Where can I find DMP templates?
Переглядів 5011 місяців тому
RDMbites | Where can I find DMP templates?
RDMbites | RNAseq data submission: metadata
Переглядів 2111 місяців тому
RDMbites | RNAseq data submission: metadata
RDMbites | Data catalogues for large projects
Переглядів 78Рік тому
RDMbites | Data catalogues for large projects
RDMbites | Data catalogues for different data types
Переглядів 55Рік тому
RDMbites | Data catalogues for different data types
RDMbites | Using a data catalogue within a research team
Переглядів 126Рік тому
RDMbites | Using a data catalogue within a research team
ELIXIR-UK: Customising data management planning with Data Stewardship Wizard
Переглядів 81Рік тому
ELIXIR-UK: Customising data management planning with Data Stewardship Wizard
ELIXIR-UK; 'what has ELIXIR done for you?'
Переглядів 652 роки тому
ELIXIR-UK; 'what has ELIXIR done for you?'
ELIXIR-UK; 'how did you get involved in ELIXIR?'
Переглядів 422 роки тому
ELIXIR-UK; 'how did you get involved in ELIXIR?'
ELIXIR-UK Case Study: Working with national and global initiatives for reproducible and FAIR Data
Переглядів 832 роки тому
ELIXIR-UK Case Study: Working with national and global initiatives for reproducible and FAIR Data
Thanks for the video`, does REDCAP now support Missing Data Codes on the mobile app.
😄 þrðmð§m
Hey, I have a problem while exporting data from redcap. Some of the data are in redcap but I cannot export them. They are not shown in redcap. They can be viewed while searching them in existing data but those records are not shown when I export them.