Відео

Part 1 of Instructions and Deliverables. (up to install and run Earl Grey on Bridges)

Final Project Background Part 2 Molecular Evolution of TEs

FInal Project Background Part 1 Brief Overview of TEs

Introduction to the Background Module for Final Projects

In this module, you will learn about High Performance Computing systems (HPCs). By the end of this module, you should be able to log into Bridges-2, an HPC in the Pittsburgh Supercomputing Center.

An overview of the course syllabus and Canvas shell: 0:00:00 Welcome! 0:01:54 Syllabus 0:02:38 Instructor Information 0:04:00 Course Information 0:08:53 Assignments 0:17:11 Attendance 0:21:05 Policy on GenAI 0:23:08 Weekly Course Schedule 0:23:08 Canvas 0:23:08 Meet Your Instructor & GTAs 0:26:13 Detailed (Daily) Schedule 0:29:36 Technology Requirements 0:35:08 Module layouts

This video provides a walkthrough of doing RNA-Seq analysis on Galaxy.

Background about how RNA-Seq data are collected and necessary computational considerations for analysis of gene expression.

Additional background about the coral symbiont dataset.

Intro ML Final Project

ML Project Background

ML Project: R Walkthrough

Intro to Module ML: Machine Learning Background

This video introduces Machine Learning algorithms and their application to gene expression data (transcriptomics).

GVA (Part 2)

GVA (Part 1)

BLAST to find Orthologs

Blast on Bridges 2 HW2

BLAST on NCBI HW1

BLAST Overview

Multiple Alignment

Pairwise alignment

Intro to Module 3

Algorithms Part 6

Algorithms Part 5

Algorithms Part 4

Algorithms Part 3

Algorithms Part 2

Algorithms Part 1