IMB Microscopy
IMB Microscopy
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Making figures & files for presentations - Part 4 – Composing your figures
This is video 4/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland.
This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/
Topics for this video include:
-Software to use making your figures
-Introduction to Adobe Illustrator
-Getting the images right (rotate, crop, adjusting brightness, scale bars overlays)
-BioRender Intro
This workshop was presented by Dr Nicholas Condon and Dr David Knight.
Переглядів: 39

Відео

Making figures & files for presentations - Part 3 - Planning your figures
Переглядів 183 місяці тому
This is video 3/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Referring to published checklists -Create a data structure -Find the author instructions -Layouts and ar...
Making figures & files for presentations - Part 7 - Adobe Illustrator - Getting Started
Переглядів 173 місяці тому
This is video 7/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Which Adobe program to use? -Setting up your workspace This workshop was presented by Dr Nicholas Condon...
Making figures & files for presentations - Part 12 - Adobe Illustrator - Creating illustrations
Переглядів 83 місяці тому
This is video 12/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Line/Pen tools -2D Shape Tools -Selection Tools -Editing shapes and paths -Transforming shapes -Working...
Making figures & files for presentations - Part 5 - Composing a video
Переглядів 173 місяці тому
This is video 5/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Important considerations for a video -Considerations (overlays, framerates, formats & compression) -Hand...
Making figures & files for presentations - Part 11 - Adobe Illustrator - Using Templates
Переглядів 73 місяці тому
This is video 11/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Why use templates -Working with templates -Setting up your template This workshop was presented by Dr N...
Making figures & files for presentations - Part 10 -Adobe Illustrator Working with Multiple Elements
Переглядів 163 місяці тому
This is video 10/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Working with graphs and charts -Aligning and distributing objects -Working with layers This workshop wa...
Making figures & files for presentations - Part 8 - Adobe Illustrator - Working with Images
Переглядів 103 місяці тому
This is video 8/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Importing figures from other applications -Working with Images -Using clipping masks to reshape image ou...
Making figures & files for presentations - Part 6 - Other Important Considerations
Переглядів 153 місяці тому
This is video 6/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Figure Legends -Materials and Methods Sections -Acknowledgements This workshop was presented by Dr Nicho...
Making figures & files for presentations - Part 2 - What not to do
Переглядів 173 місяці тому
This is video 2/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Examples of bad figures -Examples of not allowed manipulations to images This workshop was presented by ...
Making figures & files for presentations - Part 1 - What makes a good figure?
Переглядів 313 місяці тому
This is video 1/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Structure of the workshop -Anatomy of a figure -Considerations for good figures (less clutter, text, gra...
Making figures & files for presentations - Part 9 - Adobe Illustrator - Working with Text & Colours
Переглядів 103 місяці тому
This is video 9/12 of a workshop titled Making figures & files for presentations which ran on September 23rd 2024 at The University of Queensland. This workshop series has associated materials (PDF of slides) available on the OSF repository here: osf.io/ewyjm/ Topics for this video include: -Character styles and libraries -Working with Fonts -Colours: Stroke & Fill -Using colour themes and swat...
Introduction to Macro Writing in Fiji | Part 7 - Tips and Tricks
Переглядів 384 місяці тому
This video is number 10 of a 10 video series covering a workshop entitled Introduction to Macro Writing in Fiji which ran at The University of Queensland in August 2024. This workshop series has associated materials (PDFs of slides, exercise files, example macros) available on the OSF Repository here: osf.io/ewyjm/ Topics for this video include: • Commenting your code • Pseudo coding • Debuggin...
Introduction to Macro Writing in Fiji | Part 6c - Structuring your macros (Getting measurements)
Переглядів 424 місяці тому
This video is number 9 of a 10 video series covering a workshop entitled Introduction to Macro Writing in Fiji which ran at The University of Queensland in August 2024. This workshop series has associated materials (PDFs of slides, exercise files, example macros) available on the OSF Repository here: osf.io/ewyjm/ Topics for this video include: • ROI Manager • Scraping the results table • Using...
Introduction to Macro Writing in Fiji | Part 6b - Structuring your macros (Script Shell Generator)
Переглядів 174 місяці тому
This video is number 8 of a 10 video series covering a workshop entitled Introduction to Macro Writing in Fiji which ran at The University of Queensland in August 2024. This workshop series has associated materials (PDFs of slides, exercise files, example macros) available on the OSF Repository here: osf.io/ewyjm/ Topics for this video include: • Script shell generator • Printing to a file and ...
Introduction to Macro Writing in Fiji | Part 6a - Structuring your macros
Переглядів 444 місяці тому
Introduction to Macro Writing in Fiji | Part 6a - Structuring your macros
Introduction to Macro Writing in Fiji | Part 5 - Scripting in Fiji
Переглядів 524 місяці тому
Introduction to Macro Writing in Fiji | Part 5 - Scripting in Fiji
Introduction to Macro Writing in Fiji | Part 4 - Programming Basics - Conditional code blocks
Переглядів 374 місяці тому
Introduction to Macro Writing in Fiji | Part 4 - Programming Basics - Conditional code blocks
Introduction to Macro Writing in Fiji | Part 3b - Operations
Переглядів 254 місяці тому
Introduction to Macro Writing in Fiji | Part 3b - Operations
Introduction to Macro Writing in Fiji | Part 3 - Getting started in Fiji
Переглядів 394 місяці тому
Introduction to Macro Writing in Fiji | Part 3 - Getting started in Fiji
Introduction to Macro Writing in Fiji | Part 2 - Essential knowledge
Переглядів 504 місяці тому
Introduction to Macro Writing in Fiji | Part 2 - Essential knowledge
Introduction to Macro Writing in Fiji | Part 1 - Overview
Переглядів 1024 місяці тому
Introduction to Macro Writing in Fiji | Part 1 - Overview
FIJI Essentials Workshop May 2024 - Part 6 - Creating analysis pipelines
Переглядів 737 місяців тому
FIJI Essentials Workshop May 2024 - Part 6 - Creating analysis pipelines
FIJI Essentials Workshop May 2024 - Part 5 - Getting ready to publish
Переглядів 577 місяців тому
FIJI Essentials Workshop May 2024 - Part 5 - Getting ready to publish
FIJI Essentials Workshop May 2024 - Part 4 Image transformations
Переглядів 667 місяців тому
FIJI Essentials Workshop May 2024 - Part 4 Image transformations
FIJI Essentials Workshop May 2024 - Part 3 Adjusting visualisation parameters
Переглядів 757 місяців тому
FIJI Essentials Workshop May 2024 - Part 3 Adjusting visualisation parameters
FIJI Essentials Workshop May 2024 - Part 2 Opening images
Переглядів 837 місяців тому
FIJI Essentials Workshop May 2024 - Part 2 Opening images
FIJI Essentials Workshop May 2024 - Part 1 Introduction
Переглядів 1267 місяців тому
FIJI Essentials Workshop May 2024 - Part 1 Introduction
Image Processing Portal: Macros
Переглядів 103Рік тому
Image Processing Portal: Macros
Image Processing Portal: Converter
Переглядів 85Рік тому
Image Processing Portal: Converter

КОМЕНТАРІ

  • @drriffat503
    @drriffat503 4 місяці тому

    Thanks for sharing. Can you please make a video on how to get composite using z-stacks

  • @xiufangliu4900
    @xiufangliu4900 6 місяців тому

    Thank you! very useful.

  • @wisamalton162
    @wisamalton162 11 місяців тому

    I have pics for MCF 7 cells in vitro stained by Phalloidin 488, how I can analyze them please? 😢

  • @AbdullahiAhmad-u6c
    @AbdullahiAhmad-u6c Рік тому

    why do we have to converrt the images from index colour image to gray scale image, i mean is it a general standard for publication??

  • @akhtargul1546
    @akhtargul1546 2 роки тому

    Hi, I am working on phases of polymer blends using Atomic force microscopy. Please upload a video about how to filter the phase image so that we can easily differentiate phases of the blend..

  • @mamado6625
    @mamado6625 2 роки тому

    Quick question: why do you have to convert the images to 8-bit, instead of working directly with the separated channels, which are already in red-green-blue?. I usually just merge the channels without need to covert the images to 8-bit before.

  • @maheshbiradar2510
    @maheshbiradar2510 2 роки тому

    Sir will you help me for some image processing, related to trichome (hair like structure on leaf) counting ? I am trying but not getting proper results.

  • @souheilasemache6142
    @souheilasemache6142 2 роки тому

    Hello sir,I want to use this software to measure the width of the cracks of the reinforced concrete beams, if possible to apply a grid (perpendicular to the crack) on the image this grid to determine the width and thank you in advance please idea me it's urgent.

  • @Explore-ASMR-j4m
    @Explore-ASMR-j4m 3 роки тому

    why you have first change the cokor to gray scale?? n on final click it became automatically colored one?

  • @nidhirajput4985
    @nidhirajput4985 4 роки тому

    Please do video of how to scale images using image j

  • @dhruvinirmal5153
    @dhruvinirmal5153 4 роки тому

    Why is the merged image saved in tiff?

  • @chetanmundhe8619
    @chetanmundhe8619 4 роки тому

    Very good tute

  • @IQD-ic8ij
    @IQD-ic8ij 4 роки тому

    💚| complete this series plz

  • @broandsisinthehole
    @broandsisinthehole 4 роки тому

    Super helpful! Thank you

  • @crystaldu8278
    @crystaldu8278 4 роки тому

    the voice and tone sounds like the listening test in TOEFL

  • @qwaszx666
    @qwaszx666 4 роки тому

    Could you please tell me how to use pixel values at selected points in the image as numeric overlay?

  • @robertovalle7579
    @robertovalle7579 4 роки тому

    Great!

  • @rayeespadder3899
    @rayeespadder3899 5 років тому

    Hi , I have a query regarding how to process the confocal images of cancerous cells after staining them with DAPI and mitotracker cmx ros? I want to quantify fragmented , intermediate and elongated mitochondrial morphologies. Please reach me at prayees26@gmail.com. thanks

  • @MultiS14
    @MultiS14 5 років тому

    Can you please show how to quantify signal intensity inside and outside nucleus and how to analyse colocalisation of two protein

  • @gretchvelezmoro2919
    @gretchvelezmoro2919 6 років тому

    Really well explained. Thanks

  • @zeynabmousavi1736
    @zeynabmousavi1736 6 років тому

    I need to find fibers of a filament in the series of images. each image might have hundreds or thousands of these fibers and I have hundreds of images. What is the systematic approach that can find these fibers in the image?

  • @zeynabmousavi1736
    @zeynabmousavi1736 6 років тому

    How can I ask software to segment part of an image? Is software able to detect the edges of a cell image from the background?

    • @andromeda3780
      @andromeda3780 6 років тому

      Try this article. it is very useful but you need to download the plug - ins required for the segmentation www.jstage.jst.go.jp/article/plmorphol/29/1/29_15/_article/-char/ja Copy the title and search for the English version. It's available in Pdf format

    • @zeynabmousavi1736
      @zeynabmousavi1736 6 років тому

      Thanks. One more question: I need to find fibers of a filament in the series of images. each image might have hundreds or thousands of these fibers and I have hundreds of images. What is the systematic approach that can find these fibers in the image?

    • @andromeda3780
      @andromeda3780 5 років тому

      @@zeynabmousavi1736 it depends on what you are trying to investigate in the first place. For instance, in the above article the systematic approach is based on 4 parameters of the microfilaments. According to your test you must decide what the precise effect that you are suspecting to observe. Then you will be able to make analysis for the whole area of your images or for certain fields of your choice. Since you have plenty of them, then you must be comparing something against another. The values you get from the image analysis software can be translated into readable data using a statistical test of your preference.

    • @zeynabmousavi1736
      @zeynabmousavi1736 5 років тому

      @@andromeda3780 Lets explain in different way: I have fibers of the cytoskleton scattered inside an image. There are hundreds of those fibers in the image. Assuming that fibers are linear, I want the software to find all those fibers and find a specific characteristics of those fibers (for example find the angle between each fiber a vertical line in the image. So I would extract hundreds of angles from one image and I want to repeat this with several other images that I have. Also I might need to section an image and do the above analysis on a section of the image. Any recommendation in this case would be appreciated.

    • @andromeda3780
      @andromeda3780 5 років тому

      @@zeynabmousavi1736 in this case try this article journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005063 But any way the approach is the same whether you have one image, section of an image or hundreds of them. You must know how to run the analysis using software.

  • @AhmadDawar1
    @AhmadDawar1 6 років тому

    Can i find any video about the calculation of Intensity and related things which are required to be kept in mind while quantifying intensity and comparing in different biological replicates? will love to see if there is any. i just found one such video here on youtube. which lacks most of things

  • @anilha3
    @anilha3 7 років тому

    Could you please upload how to process a large-sized video in imageJ

  • @nematuq
    @nematuq 7 років тому

    Good to know about this video; you have presented very clearly. Would love to see videos for understanding co-localization analyses at Image J. Thank you !

    • @CoLocalizationRS
      @CoLocalizationRS 6 років тому

      Hi, you may want to check CoLocalizer apps to quantify colocalization on Mac and iPad: ua-cam.com/users/CoLocalizationRS