Відео

Can you make a tutorial on RunDeepProfiler

Am a bit confused in 29:15 how you were able to open the ProbabiltiyPerClass Window

Thank you for these very clear videos. It seems that the Extended Particle Analyser extension is no longer available. Do you know if there is an alternative?

Thank you very very much!!! Very useful for me and my fried!

In the Metadata module, when trying to match the CSV "well" to the Image Metadata "well", the dropdown for "Image Metadata" only contains "FileLocation, Frame, Series". Why does it not contain the rest of the metadata parsed out from the Regex extraction?

3D starts at 47 minutes

I tried to use the cell profiler pipeline and it works but I want to add object tracking to analyze time-lapse images but it is not working for some reason. I am a new user .. Any idea ?

Thanks for this video. Very clear, and good examples. For custom colors, my objects are rather small and have odd shapes, so I draw several custom ROIs in ImageJ and take the average RGB values reported. How do I convert traditional RGB values into relative absorbance (what CellProf uses)? I'd like to just enter these manually, rather than using a reference image.

Can you tell me how do do ground truth annotation with a black background and a white dot representing object in the image?

Well explained tutorial! While the audio would have profited from a proper headset, it is not particularly bad. The visualizations and steps are very helpful!

could you please share the Morpheus input file

could you please share me the Morpheus input file format

Could you please share the link for Morpheus input file format

Sniffles at 2:04

Hi. Based on the presented content, by pressing Update in the Name section, the system gives the error "encountered an unrecoverable error in name and type during startup ". Please advise. Thank you.

Hi there! thank you so much for sharing this!. i have a question: in the minute 22, how did you get the second histogram of the image? what modifications did you make in the image to obtain it?

It has been very useful for my project and presentation. With my most sincere thanks.

I will attempt measurements of cells in fruit tissues from confocal microscopy. Thank you very much for this interesting and well-made tutorial!

Great

Wonderful and stimulating talk. Thanks a lot!

Thank you, this was nice and simple

Hello, how would I convery hundreds of .tiff files to .czi files?

where can find the pixel_based_classification.cpppipe pipeline file ?

I downloaded the cell counting pipeline, but I am unable to drag it into cell profiler. How do I rectify this issue?

Thanks for such a nice workshop

Hi where is the advanced segmentation tutorial video? I'm actually interested in figuring out how to look at only the foci in the nucleus with in the same channel. Say Hoechst to segment nucleus and then look at high Hoechst intensity spots within nucleus.

where i can find an explanation about the correct illumination calculate function?

7:47 software screen 16:45 object detection 20:30 separating touching objects 28:57 measurements 32:47 information is hidden in images 35:44 example pipelines

Excellent. Thank you for posting. Looking forward to future quantitative microscopy videos.