SWAT4HCLS
SWAT4HCLS
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Analyzing SPARQL Query Logs: A Study on Schema Coverage and Query Content
The advent of Knowledge Graphs (KGs) has revolutionized knowledge representation, enabling enhanced understanding, reasoning, and interpretation of complex data for both humans and machines. As a crucial tool for addressing real-world challenges, KGs rely heavily on SPARQL queries for data access and manipulation. Despite their extensive use, the alignment of these queries with the underlying KG schema is not well- understood. This paper introduces ’SPARQL schema coverage’ as a novel measure to assess the extent to which SPARQL queries reflect the KGs’ content and structure. Utilizing bio2rdf SPARQL logs as a case study, the paper reveals a SPARQL schema coverage of 98%, demonstrating a strong alignment between user queries and the KG schema, thereby highlighting high user engagement. This finding is significant for KG engineers in reshaping ontology and for triple store administrators in enhancing performance through targeted caching. The study addresses key research questions regarding the nature and extent of KG elements referred to in user queries and their coverage of the available data. This approach not only provides a new perspective in KG utilization but also aids in optimizing KG design and application, offering valuable insights for the future development and optimization of knowledge graphs.
Переглядів: 30

Відео

Applying the RDA Data Maturity Model on the Core Dataset of the German Medical Informatics
Переглядів 216 місяців тому
Full title: Applying the RDA Data Maturity Model on the Core Dataset of the German Medical Informatics Initiative The German Medical Informatics Initiative authored a modularised Core Dataset which enables the sharing of clinical routine data across German hospital sites. In this work, we apply the RDA Data Maturity Model to run a FAIR assessment on one module of the Core Dataset. We summarise ...
Automated drug repurposing workflow for rare diseases
Переглядів 456 місяців тому
There are over 7000 known rare diseases. Each one affects fewer than 1 in 2000 individuals, but collectively, they affect approximately 10% of the European and American populations. Developing treatment options for rare diseases is essential for those with such conditions, but as drug development is a time-consuming and costly process, developing new treatments is not often economically viable....
An Extension of the SPHN RDF Schema for Seamless Integration and FAIRification of Omics Data
Переглядів 166 місяців тому
Full title: Bridging Clinical and Genomic Knowledge: An Extension of the SPHN RDF Schema for Seamless Integration and FAIRification of Omics Data The Swiss Personalized Health Network (SPHN) is a Swiss research infrastructure initiative that aims to facilitate the exchange of health-related data in a FAIR manner. The SPHN Dataset and SPHN RDF Schema form an essential part of the SPHN Semantic I...
Keynote - Cultivating Data Excellence: USDA's Semantic Survey
Переглядів 466 місяців тому
The National Agricultural Library, in partnership with the USDA Agricultural Research Service’s Partnerships for Data Innovations (PDI) initiative, is developing a unified system for USDA standards related to vocabulary, semantic modeling, and data validation and integration. This system, known as the USDA Semantic Survey, aims to provide a user-friendly way for agricultural researchers to acce...
Enchancing FAIR Data Point`s search capability as a FAIR service
Переглядів 136 місяців тому
The FAIR Data Point has an increasingly important role in efforts to meet FAIR principles. It provides machine readable access to the metadata of different types of digital objects. In this paper, we focus on metadata of datasets. Since its first reference implementation, more tailored implementations have been developed and deployed in the Health Care and Life Sciences domain. However, a probl...
Explaining Graph Neural Network Predictions for Drug Repurposing
Переглядів 516 місяців тому
Graph Neural Networks (GNNs) are powerful tools for graph-related tasks, excelling in progressing graph-structured data while maintaining permutation invariance. However, their challenge lies in the obscurity of new node representations, hindering interpretability. This paper introduces a framework addressing this limitation by explaining GNN predictions. The proposed method takes any GNN predi...
Exploring the Role of Generative AI in Constructing Knowledge
Переглядів 156 місяців тому
Full title: Exploring the Role of Generative AI in Constructing Knowledge, Graphs for Drug Indications with Medical Context The medical context for a drug indication provides crucial information on how the drug can be used in practice. However, the extraction of medical context from drug indications remains poorly explored, as most research concentrates on the recognition of medications and ass...
Extracting shapes from large RDF data collections
Переглядів 306 місяців тому
There is an increasing number of projects based on RDF graphs. Shape languages, such as SHACL and ShEx, have been proposed to support the evolution of such projects on two main aspects: description and validation of RDF content. However, producing shapes for an existing knowledge graph is an arduous and time-consuming task when dealing with large data sources. Automatic shape extractors are sof...
Keynote - From developing New Drugs to Locating Critical Minerals
Переглядів 146 місяців тому
Full title: From developing New Drugs to Locating Critical Minerals: Using AI to Create Knowledge Graphs that Turn Data into Knowledge Creating knowledge graphs from data provides a way of combining sources of information in ways that can then be exploited to solve various real-world problems. However, the challenge in building knowledge graphs is getting the data into a usable form. In this ta...
Insights in FAIRification planning
Переглядів 56 місяців тому
The FAIR principles provide guidance for making data accessible, interoperable, and reusable for both humans and machines. Data that is made FAIR can be efficiently analysed and reused with other FAIR datasets. Consequently, adherence to the FAIR principles has become a valuable characteristic for research projects in several areas, including those areas covered by the SWAT4HCLS conference.
Navigating The Maze: Unveiling rare autoimmune disorder with help of Semantic Web technologies
Переглядів 106 місяців тому
Full title: Navigating The Maze: Unveiling rare autoimmune disorder with help of Semantic Web technologies, ontology-based knowledge representation and reasoning driven by pan-omic data and network analysis. Semantic models, or ontologies, are key to building powerful knowledge graphs that help organizations drive explainable and trustworthy business decisions. They enrich existing data with co...
Keynote - Orphanet: contribution to FAIR in the field of rare diseases
Переглядів 56 місяців тому
Keynote - Orphanet: contribution to FAIR in the field of rare diseases
Panel: 10 years of FAIR principle
Переглядів 76 місяців тому
The panel to ask everything you wanted to know about FAIR, but were afraid to ask. The FAIR principles were conceived in a Leiden Lorentz workshop in 2014, later published as 15 principles in the milestone paper of 2016. Earlier in January a second Lorentz workshop was held to look back, but especially ahead. We are honoured to bring to the floor a panel with the first and last author of the pr...
Refining SemOpenAlex Concept Ontology: A Constraint-Aware Approach via Knowledge Graph Embeddings
Переглядів 196 місяців тому
Full title: Refining SemOpenAlex Concept Ontology: A Constraint-Aware Approach via Knowledge Graph Embeddings and SKOS Constraints The continuous growth in scientific publications has led to an increasing demand for efficient solutions in managing vast amounts of scholarly information. SemOpenAlex, an academic article Knowledge Graph (KG), aims to organize the scientific papers by tagging them ...
Unlocking Semantics as a FAIR Implementation Profile.
Переглядів 66 місяців тому
Unlocking Semantics as a FAIR Implementation Profile.
Semantic Knowledge Modeling & Publishing - Ontologies & Vocabularies
Переглядів 166 місяців тому
Semantic Knowledge Modeling & Publishing - Ontologies & Vocabularies
Aligning the FAIR data principles and HL7 FHIR profiling
Переглядів 106 місяців тому
Aligning the FAIR data principles and HL7 FHIR profiling
Interacting and integrating with a federated network of FAIR rare disease resources
Переглядів 146 місяців тому
Interacting and integrating with a federated network of FAIR rare disease resources
Constructing life sciences knowledge graphs with more semantics and less code
Переглядів 306 місяців тому
Constructing life sciences knowledge graphs with more semantics and less code
Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings
Переглядів 76 місяців тому
Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings
SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science
Переглядів 396 місяців тому
SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science
SPHN strategy to unravel the semantic drift between versions of standard terminologies
Переглядів 46 місяців тому
SPHN strategy to unravel the semantic drift between versions of standard terminologies
SWAT in industry: Cause-and-effect to empower drug discovery in a generative AI world
Переглядів 126 місяців тому
SWAT in industry: Cause-and-effect to empower drug discovery in a generative AI world
SWAT in industry: Reflecting on the FAIR Cookbook: Applicability to Industry Settings
Переглядів 86 місяців тому
SWAT in industry: Reflecting on the FAIR Cookbook: Applicability to Industry Settings
SWAT@ONTOFORCE: Revolutionizing pediatric oncology research with findable data through DISQOVER
Переглядів 106 місяців тому
SWAT@ONTOFORCE: Revolutionizing pediatric oncology research with findable data through DISQOVER
SWAT@SciBite: Ontologies and LLMs: democratising scientific data
Переглядів 496 місяців тому
SWAT@SciBite: Ontologies and LLMs: democratising scientific data
SWAT@The Hyve: From Data to Action with FAIRSPACE: a semantic web-based solution for R&D data mgmt
Переглядів 186 місяців тому
SWAT@The Hyve: From Data to Action with FAIRSPACE: a semantic web-based solution for R&D data mgmt
Take CARE of your patient data. Clinical And Registry Entries (CARE) Semantic Model
Переглядів 46 місяців тому
Take CARE of your patient data. Clinical And Registry Entries (CARE) Semantic Model
Keynote - The Library, the Lab, and the Cabinet of Curiosities; integrating biodiversity data
Переглядів 286 місяців тому
Keynote - The Library, the Lab, and the Cabinet of Curiosities; integrating biodiversity data

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