- 30
- 23 580
Neuroscience Information Framework
Приєднався 16 кві 2014
Finding a RRID on SciCrunch
Voiceover and Screen Capture: Anita Bandrowski, Ph.D.
Editor: Devon Gilpatrick
Editor: Devon Gilpatrick
Переглядів: 45
Відео
Resource Suggest
Переглядів 1863 роки тому
Voiceover and Screen Capture: Anita Bandrowski, Ph.D. Editor: Devon Gilpatrick
![[SDP 2021] Detecting Anatomical and Functional Connectivity Relations in Biomedical Literature](http://i.ytimg.com/vi/x6yQ9lZ6PVk/mqdefault.jpg)
[SDP 2021] Detecting Anatomical and Functional Connectivity Relations in Biomedical Literature
Переглядів 903 роки тому
Full title: Detecting Anatomical and Functional Connectivity Relations in Biomedical Literature via Language Representation Models Ibrahim Burak Ozyurt, Joseph Menke, Anita Bandrowski, Maryann Martone Abstract Understanding of nerve-organ interactions is crucial to facilitate the development of effective bioelectronic treatments. Towards the end of developing a systematized and computable wirin...
Neuroscience Data: Visualize, Collaborate & Build, Dr. Stephen Larson
Переглядів 4756 років тому
Title: Neuroscience Data: Visualize, Collaborate & Build Author: Dr. Stephen Larson Time: July 20, 2018: 11 AM PST/ 2 PM EST Synopsis: The modern neuroscience researcher or neurotech company faces a challenging landscape in order to use experimental or device data to its maximal potential. While data collection and accumulation are expanding, approaches to data management and insight gathering ...
IEDB Analysis Resource - Package of tools for immune epitope prediction and analysis, Dr. Sinu Paul
Переглядів 8 тис.6 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on June 29th, 2018: Title: IEDB Analysis Resource - Package Of Tools For Immune Epitope Prediction And Analysis RRID: Immune Epitope Database and Analysis Resource (RRID:SCR_006604) : scicrunch.org/resources/Tools/record/nlx_144509-1/SCR_006604/resolver?q=*&l=&sort=internal_create_date Presenter: Dr. Sinu Paul Biogra...
The Immune Epitope Database and Analysis Resource, Dr. Randi Vita
Переглядів 8826 років тому
Title: The Immune Epitope database and Analysis Resource RRIDs: The Immune Epitope database and Analysis Resource (RRID:SCR_006604) : scicrunch.org/resources/Tools/record/nlx_144509-1/SCR_006604/resolver?q=*&l=&sort=internal_create_date National Institute of Allergy and Infectious Diseases (RRID:SCR_012740) : scicrunch.org/resources/Tools/record/nlx_144509-1/SCR_012740/resolver?q=NIAID&l=NIAID ...
The Red Queen’s race, Improving Data Quality, Dr. Hauke Bartsch
Переглядів 6696 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on May 4th, 2018: Title: The Red Queen’s Race, How Transparency, Interactivity And Gamification Can Be Used To Improve Data Quality RRID: scicrunch.org/resolver/SCR_015769 Presenter: Dr. Hauke Bartsch Biography: Holding a Ph.D. in Computational Neuroscience from The Technical University in Berlin, Dr. Hauke Bartsch h...
Mouse Phenome Database, Dr. Molly Bogue And Dr. Elissa Chesler
Переглядів 2326 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on April 27th, 2018: Title: Mouse Phenome Database (RRID:SCR_003212): An Integrative Database And Analysis Suite For Curated Empirical Phenotype Data, RRID: scicrunch.org/resolver/SCR_003212 Presenters: Dr. Molly Bogue And Dr. Elissa Chesler Biographies: Dr. Molly Bogue is a Research Scientist at The Jackson Laborato...
Identifiers.org, Compact identifier resolution and services, Dr. Sarala Wimalaratne
Переглядів 1676 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on April 20th, 2018: Title: Identifiers.org (RRID:SCR_003735): Compact Identifier Resolution And Services RRID: scicrunch.org/resolver/SCR_003735 Presenter: Dr. Sarala Wimalaratne Biography: Dr. Sarala Wimalaratne is the Project Lead for the Identifiers.org system. She envisions, implements and manages the Identifier...
GeneWeaver Demo from NeuroTools Webinar
Переглядів 1,6 тис.6 років тому
This video is a portion of the NeuroTools Webinar on GeneWeaver: ua-cam.com/video/Vq7aZWNLM4c/v-deo.html
GeneWeaver: A System For The Integration And Analysis Of Heterogeneous Functional Genomics Data
Переглядів 3666 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on April 6th, 2018: Title: GeneWeaver (RRID:SCR_003009): A System For The Integration And Analysis Of Heterogeneous Functional Genomics Data RRID: scicrunch.org/resolver/SCR_003009 Presenters: Dr. Elissa J. Chesler And Dr. Erich J. Baker Biographies: Dr. Elissa J. Chesler: Dr. Chesler is a professor at The Jackson La...
Tools of the Trade: From Data to Results in Neuroimaging with Dr. Satrajit Ghosh
Переглядів 1,5 тис.6 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on March 16th, 2018: Title: Tools Of The Trade: From Data To Results In Neuroimaging RRIDs for Tools: Databases/Webservers: XNAT - The Extensible Neuroimaging Archive Toolkit (RRID:SCR_003048) : scicrunch.org/resolver/SCR_003048 IDA, Image & Data Archive (RRID:SCR_007283) : scicrunch.org/resolver/SCR_007283 LORIS - L...
DataLad, Dr. Yaroslav O. Halchenko
Переглядів 4206 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on March 2nd, 2018: Title: DataLad (RRID:SCR_003931) - Decentralized Distribution And Management Of Scientific Datasets RRID: scicrunch.org/resolver/SCR_003931 Presenter: Dr. Yaroslav O. Halchenko: Currently the Research Assistant Professor at Psychology and Brain sciences department at Dartmouth, leading the Center ...
Cellosaurus, Dr. Amos Bairoch
Переглядів 2606 років тому
The Neuroscience Information Framework Presents this week's NeuroTools Webinar on February 16th, 2018: Title: Cellosaurus (RRID:SCR_013869) RRID: scicrunch.org/resolver/SCR_013869 Presenter: Dr. Amos Bairoch: Amos Bairoch is a Swiss bioinformatician and Professor of Bioinformatics at the Department of Human Protein Sciences of the University of Geneva where he leads the CALIPHO group at the Swi...
NIDA Core Center of Excellence in Omics, Systems Genetics, and the Addictome, Dr. Rob Williams
Переглядів 2696 років тому
NIDA Core Center of Excellence in Omics, Systems Genetics, and the Addictome, Dr. Rob Williams
Hypothesis Open, Web based Annotation for Biomedicine, Dr Maryann Martone
Переглядів 1347 років тому
Hypothesis Open, Web based Annotation for Biomedicine, Dr Maryann Martone
The Database of Genotypes and Phenotypes dbGAP, Michael Feolo
Переглядів 9427 років тому
The Database of Genotypes and Phenotypes dbGAP, Michael Feolo
Mutant Mouse Resource & Research Centers MMRRC National Consortium, Dr. Kent Lloyd
Переглядів 1597 років тому
Mutant Mouse Resource & Research Centers MMRRC National Consortium, Dr. Kent Lloyd
The Human Connectome Project, Dr. Jennifer Elam
Переглядів 3,8 тис.7 років тому
The Human Connectome Project, Dr. Jennifer Elam
The World of NeuroMorpho org, Dr Rubén Armañanzas
Переглядів 2877 років тому
The World of NeuroMorpho org, Dr Rubén Armañanzas
NIF And DkNET, Making Research Tools FAIR! Dr. Jeffrey Grethe
Переглядів 807 років тому
NIF And DkNET, Making Research Tools FAIR! Dr. Jeffrey Grethe
Cell Type Resolved Gene Expression with NeuroExpresso, Dr. Paul Pavlidis
Переглядів 3977 років тому
Cell Type Resolved Gene Expression with NeuroExpresso, Dr. Paul Pavlidis
The Neuroscience Gateway, Subhashini Sivagnanam
Переглядів 3047 років тому
The Neuroscience Gateway, Subhashini Sivagnanam
Neuroimaging Informatics Tools And Resources Clearinghouse (NITRC), Dr. David Kennedy
Переглядів 2817 років тому
Neuroimaging Informatics Tools And Resources Clearinghouse (NITRC), Dr. David Kennedy
RRIDs, What Are They Good For And How Do I Use Them, Drs. Bandrowski and Martone
Переглядів 4727 років тому
RRIDs, What Are They Good For And How Do I Use Them, Drs. Bandrowski and Martone
The 6 Easy Steps to annotate your resource using Hypothes.is and SciCrunch
Переглядів 458 років тому
The 6 Easy Steps to annotate your resource using Hypothes.is and SciCrunch
I want to check the immunogenicity of the antibodies. In this case, should I use the average IC50 size as an indicator, or should I consider the one with the smallest IC50 to be highly immunogenic?
Insightful
So where are the epitopes? Are they the result of MHC binding prediction?
To learn more about IEDB and also get assistance - check out their help page: help.iedb.org/hc/en-us
how can I find the structural non-structural protein sequence of HCV.like E1 ,E2
To learn more about IEDB and also get assistance - check out their help page: help.iedb.org/hc/en-us
From NCBI virus in Google, write viral name (not abbreviation) in search icon and choose viral host and protein; sequence and alot of information about it will appear
Hey, i play around with neural networks with evolving topology and I'm thinking about converting one to the NeuroML format. However, the networks are lacking spatial information completely. What options do I have to use one of the existing tools to create a "live" 3D visualization? This should include automatically generating some reasonable 3D topology (e.g., by analyzing the closest neighbors or something) and secondly, monitoring the node/connection values during simulation. Is any of this possible? If so, could you give me some links to the products/tools/tutorials i'd have to check out? Thx!
Hi. How many neurons in your networks? If you want to monitor the connection values, I'm assuming you have some sort of "learning" for changing the topology? Are these mechanisms compatible with NeuroML? If so, the visualization can be done with existing tools but I suspect that there may be a mismatch here. Within the NeuroML domain, we typically think of existing connections that may strengthen or weaken but not a changing topology. I don't know of any existing tools for generating 3D topology automatically but there are a few tools that might be useful. Would need to know a bit more about your models.