BV-BRC
BV-BRC
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Fall Outbreak Webinar 3: Tools for Analyzing Data with BV-BRC
BV-BRC tools can be utilized to analyze data. This webinar highlights key BV-BRC tools and services including subspecies classification, META Cats, Sequence Feature Data, Primer Design, Fastq Utilities, Viral Genome Annotation, Multiple sequence alignment & SNP / variation analysis, HA Subtype Numbering Conversion, and Sequence Submission. It also highlights BV-BRC bulk data analysis. The BV-BRC Flan component of Sequence Submission will be updated with VADR in the future.
Переглядів: 9

Відео

Fall Outbreak Webinar 2: Outbreak Pages and Phylogenetics
Переглядів 10Місяць тому
PLEASE NOTE! Captions are autogenerated and may not be accurate in all cases. An overview of BV-BRC Outbreak pages, and phylogenetic analysis within the BV-BRC.
Fall Outbreak Webinar 1: Outbreak Data Searching Webinar
Переглядів 20Місяць тому
Use the BV-BRC to Search for data. This webinar is an overview of the BV-BRC, the database; genomic, protein, surveillance, sequence feature variant type data and more.
White Board Brainstorming Session Day 3
Переглядів 667 місяців тому
White Board Brainstorming Session Day 3 Moderator: Alison St John, PhD, CDC Panel discussion What are the needs of the Public Health community? How do we best meet those needs Who should develop, implement, and maintain the classification system(s)? Will one approach/system suffice, or do multiple systems need to be developed and supported? What other responsibilities need to be supported (e.g....
White Board Brainstorming Session Day 2
Переглядів 317 місяців тому
White Board Brainstorming Session Day 2 Moderators: Wiriya Rutvisuttinunt, PhD, NIAID Session Moderators Questions: What are the limitations of current classification systems? Are they able to track rapidly evolving viruses? Are they able to track associated phenotypic changes? Can they be used to effectively model future genotypic and phenotypic changes are their impact on disease? Can we use ...
White Board Brainstorming Session Day 1
Переглядів 337 місяців тому
White Board Brainstorming Session Day 1 Moderators: Elodie Ghedin, PhD, NIAID Session Moderators Questions: To what extent can we leverage our understanding of virus evolution to improve classification, predict novel, impactful strains, develop more effective diagnostics and vaccines, and ultimately inform control and response strategies?
Session VII: The Public Health Impact, Challenges and the Path Forward
Переглядів 4,5 тис.7 місяців тому
Session VII: The Public Health Impact, Challenges and the Path Forward The role of virus classification to support the public health response to disease and how that classifications helps us identify new threats, track outbreaks, and develop targeted interventions. Moderator Paul Eder, PhD, NIAID Panel and Session Topics NIAID: To better understand, treat, and ultimately prevent infectious dise...
Session VI: Analytical and visualization tools
Переглядів 8997 місяців тому
Session VI: Analytical and visualization tools User tools and platforms available to study virus evolution during an outbreak. Moderator Indresh Singh, J. Craig Venter Institute, BV-BRC Panel and Session Topics NCBI Virus / Taxonomy Eneida Hatcher, PhD, NCBI Virus sub-species in ViralZone and UniProtKB Philippe Le Mercier, PhD, Swiss-Prot group, Swiss Institute of Bioinformatics, Switzerland Th...
Session V: Virus classification tools
Переглядів 2067 місяців тому
Session V: Virus classification tools Tools to explore virus evolution and their classification. Watch Recording Here Moderator Eneida Hatcher, PhD, NCBI Panel and Session Topics Clade and lineage assignment with Nextclade Cornelius Roemer, University of Basel, Switzerland UShER and autolin: Identifying virus lineages Angie Hinrichs, University of California Santa Cruz BV-BRC sub-species classi...
Session IV: Virus classification schemes
Переглядів 1257 місяців тому
Session IV: Virus classification schemes Species and sub-species: Different approaches and schemes for the classification of viruses. Moderator Richard Scheuermann, PhD, National Library of Medicine (NLM) Panel and Session Topics The ICTV taxonomy: Classification and nomenclature Jens H. Kuhn, PhD, NIH/NIAID/DCR Integrated Research Facility at Fort Detrick GISAID classification Krista Queen, Ph...
Session III: Diverse Viewpoints: Exploring Classification from Different Perspectives
Переглядів 2 тис.7 місяців тому
Session III: Diverse Viewpoints: Exploring Classification from Different Perspectives Exploring and understanding different virus classification systems and how they impact our responses to disease outbreaks. Moderator Conrad Schoch, PhD, NCBI Panel and Session Topics Influenza and SARS-CoV-2: Evolution, Immunity, and Surveillance Derek Smith, PhD, University of Cambridge Virus classification a...
Session II: Unraveling the complexities of RNA and DNA viruses
Переглядів 2227 місяців тому
Session II: Unraveling the complexities of RNA and DNA viruses Examples of the evolution of virus disease, the impact of lineage evolution on pathogenicity, and the consequences for classifying and responding to particular virus threats. Moderator James Rodney Brister, PhD, NCBI Panel and Session Topics [15-minute talks] Evolution, epidemiology, and RNA virus disease Justin Bahl, PhD, Universit...
Session I: Tracking virus evolution through sub-species classification
Переглядів 1197 місяців тому
Session I: Tracking virus evolution through sub-species classification The evolution of viruses during disease outbreaks and the impact this process has on sub-species classification, especially considering rapid rates of virus evolution. Moderator Elliot Lefkowitz, PhD, University of Alabama at Birmingham Panel and Session Topics Tracking and predicting the spread and evolution of RNA viruses ...
Welcome and Introduction
Переглядів 527 місяців тому
Goals, Expectations, and Logistics Kicking off April 8, Day 1: Virus Sub-species Classification: What and Why
BV BRC H5N1 Webinar
Переглядів 1867 місяців тому
Given the current situation surrounding increased cases of H5N1, and transmission in new hosts, the BV-BRC team updated the community on how to find data and submit data and tools to support analysis on the BV-BRC. Check out the video to learn more about searching for H5N1 data, submitting influenza sequences, and generating a tree or sub-species classification tool and our new outbreak pages h...
Changing to a different gene within the Compare Region Viewer.
Переглядів 448 місяців тому
Changing to a different gene within the Compare Region Viewer.
Downloading the image from the Compare Region Viewer.
Переглядів 338 місяців тому
Downloading the image from the Compare Region Viewer.
Changing the Compare Region Viewer to show genome or feature groups.
Переглядів 1108 місяців тому
Changing the Compare Region Viewer to show genome or feature groups.
Filtering the Compare Region Viewer
Переглядів 278 місяців тому
Filtering the Compare Region Viewer
Anatomy of the Compare Region Viewer
Переглядів 648 місяців тому
Anatomy of the Compare Region Viewer
Creating Genome and Feature Groups
Переглядів 1258 місяців тому
Creating Genome and Feature Groups
Introduction to the Compare Region Viewer
Переглядів 1248 місяців тому
Introduction to the Compare Region Viewer
Taxonomic Classification Service Results Part Two- Analysis of individual read files.
Переглядів 479 місяців тому
Taxonomic Classification Service Results Part Two- Analysis of individual read files.
Taxonomic Classification Service - Submission and results when multiple read file are submitted.
Переглядів 619 місяців тому
Taxonomic Classification Service - Submission and results when multiple read file are submitted.
Taxonomic Classification Service Results Part One.
Переглядів 539 місяців тому
Taxonomic Classification Service Results Part One.
Taxonomic Classification Service Introduction.
Переглядів 1289 місяців тому
Taxonomic Classification Service Introduction.
Taxonomic Classification Service job submission.
Переглядів 579 місяців тому
Taxonomic Classification Service job submission.
Genome Alignment Service (pt. 5) - Adjusting Parameters
Переглядів 5010 місяців тому
Genome Alignment Service (pt. 5) - Adjusting Parameters
Genome Alignment Service (pt. 4) - Alignment Viewer
Переглядів 5810 місяців тому
Genome Alignment Service (pt. 4) - Alignment Viewer
Genome Alignment Service (pt. 3) - Job Results
Переглядів 5010 місяців тому
Genome Alignment Service (pt. 3) - Job Results

КОМЕНТАРІ

  • @sMr_Borgov
    @sMr_Borgov 2 місяці тому

    is there a way to create a group of genomes while adding a genome from my own laptop. When I upload one that way what file type I should choose?

  • @sMr_Borgov
    @sMr_Borgov 2 місяці тому

    When I try to upload my own genome from my laptop to add to phylogenetic tree construction it doesn't seem to work

    • @rebeccawattam7735
      @rebeccawattam7735 2 місяці тому

      Your genome has to be annotated in BV-BRC before you can include it in the Bacterial Genome Tree service.

    •  День тому

      @@rebeccawattam7735 I am experiencing a similar issue. I have annotated the sequence on BV-BRC but am unable to add it to the Group.

  • @jemimabaum2537
    @jemimabaum2537 3 місяці тому

    Hello BV-BRC. I have a question when it comes to customising genome annotation output. How would one include a column on genome_id in the xls output file? Thanks.

  • @barbaravonmarschall1282
    @barbaravonmarschall1282 6 місяців тому

    What you did from 2020-2024 .??????

  • @omarlocke4351
    @omarlocke4351 6 місяців тому

    monkey pox from bats, huh…?

  • @sengsheng3709
    @sengsheng3709 7 місяців тому

    Very Nice work

  • @samaali5583
    @samaali5583 9 місяців тому

    when i tried to open taxonomic classification now i didn't find the icon to choose read file or assembled contigs and i want to upload contigs

    • @BVBRC
      @BVBRC 6 місяців тому

      The service is for reads only. Use Similar Genome Finder to identify the genomes closest to your contigs.

  • @mandystoebe8811
    @mandystoebe8811 9 місяців тому

    *Promosm*

  • @susanasanjuanlopez7509
    @susanasanjuanlopez7509 11 місяців тому

    is there a problem with the "compare regions viewer" option?

  • @susanasanjuanlopez7509
    @susanasanjuanlopez7509 11 місяців тому

    I click on "compare regions viewer", but it doesn't load anything, I've had this problem for a month. Is it the page?

  • @LnPlayEng
    @LnPlayEng 11 місяців тому

    A quick question, what if the reference genome is not available on your database? I want to run RNA seq for Glehnia, can I use the tool in discussion?

  • @LnPlayEng
    @LnPlayEng 11 місяців тому

    Thank you very much.

  • @Sourcecodemastergoaheadcheater
    @Sourcecodemastergoaheadcheater 11 місяців тому

    Well some learn the easy way, then some learn the hard way. Usually choice 😂😂

  • @サラマンダー-q7z
    @サラマンダー-q7z 11 місяців тому

    I can not view KEGG pathway by use this tool.Not reaction why?

  • @augustusgilbert5383
    @augustusgilbert5383 Рік тому

    *Promosm*

  • @telmasousa4648
    @telmasousa4648 Рік тому

    Thank you very much for the explanation; it is very elucidating. However, when I submit my data in contigs and not in SRA, when I check the annotations in VIEW, nothing appears. The information I receive is 'Genome 287.33137 was not found. This could be because it is currently being indexed in the PATRIC database, it does not exist, or you do not have read privileges.' How can this be resolved?

  • @DB-kv3wu
    @DB-kv3wu Рік тому

    Best!

  • @hayfordodoi7178
    @hayfordodoi7178 Рік тому

    Rebecca. Thank you. Fascinating stuff

  • @rezendeous123
    @rezendeous123 Рік тому

    Excellent workshop for biologists

  • @amany1995-u3g
    @amany1995-u3g Рік тому

    Thank you

  • @amany1995-u3g
    @amany1995-u3g Рік тому

    Thank you

  • @tamrinimelda
    @tamrinimelda Рік тому

    Kepada yang terhormat : dinas lingkungan hidup atau dinas kesehatan, tolong lakukan penutupan bagian atas saluran got yang ada di depan pesantren ekonomi darul uchwah, kedoya selatan, jakarta barat #salamTAMRINgantenk

  • @amazai
    @amazai 2 роки тому

    awesome

  • @amazai
    @amazai 2 роки тому

    Thank you very much for nice lecture. I want to learn from you more

  • @DeepshikhaGupta-fy8dd
    @DeepshikhaGupta-fy8dd 2 роки тому

    Thank you Rebecca for the guided tour. I am interested to know if the Metagenomic service works for Shotgun metagenome data also of only for amplicon metagenome data?

  • @Luis-gm9ee
    @Luis-gm9ee 2 роки тому

    Prⓞм𝕠𝕤𝐌

  • @crynew9319
    @crynew9319 2 роки тому

    Thank you

  • @benken9601
    @benken9601 2 роки тому

    Hello everyone am very happy today am cure totally completely forever form herpes simplex disease with the help of Dr omoye you can also contact him on his UA-cam channel ua-cam.com/channels/lshMWAD9EFaKUTbdbtBH7A.html He also cure all kind disease Herpes simplex 1&2 Diabetes medication Penis enlargement product STD infection medication Monkeypox He also cure all kinds of disease such as Herpes simplex 1&2 Diabetes medication Penis enlargement product STD infection medication Monkeypox HIV/AIDS Low sperm can Erectile dysfunction Diabetes Hepatitis Pregnancy product High blood pressure Low sugar level High sugar level Infections Body odors

  • @joyjohnson3561
    @joyjohnson3561 2 роки тому

    #DrObahistoricalherbs🤩

  • @joyjohnson3561
    @joyjohnson3561 2 роки тому

    Its a big thanks to Dr oba herbal medication on UA-cam who got me me cured completely from monkeypox disease 💚

  • @kippielapan8036
    @kippielapan8036 2 роки тому

    ρгό𝔪σŞm 🎊