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iMeta Science
Приєднався 8 кві 2016
iMeta (ISSN: 2770-5986, eISSN:2770-596X) is an open-access and Wiley partner journal and launched by scientists of Chinese Academy of Sciences. The journal aims to promote metagenomics and bioinformatics development by publishing original researches, reproducible methods or protocols, and systemic reviews. The goal is to publish highly impact papers (Top 10%) with a wide range of readers, and to provide peers with novel findings, easy-to-use analysis tools, and systematic knowledge. The first issue released in Feb. 2022.
Metagenomic analysis sheds light on the mixotrophic lifestyle of bacterial phylum Zhuqueibacterota
Metagenomic analysis sheds light on the mixotrophic lifestyle of bacterial phylum Zhuqueibacterota
Zheng-Han Lian, Nimaichand Salam, Sha Tan, Yang Yuan, Meng-Meng Li, Yu-Xian Li, Ze-Tao Liu, Chao-Jian Hu, Ai-Ping Lv, Yu-Ting OuYang, Cai-Yu Lu, Jing-Yi Zhang, Ying Chen, Le-Bin Chen, Zhen-Hao Luo, Bin Ma, Zheng-Shuang Hua, Jian-Yu Jiao, Wen-Jun Li, Lan Liu
First published: 23 November 2024 doi.org/10.1002/imt2.249
Graphical Abstract
Zhuqueibacterota is a novel bacterial phylum proposed based on hot spring metagenomes and public metagenome-assembled genomes, classified within the Fibrobacterota-Chlorobiota-Bacteroidota superphylum. This globally distributed phylum consists of one class and five orders, with the majority of its members being facultative anaerobes. Notably, the order Zhuqueibacterales utilizes hydrogen as an electron donor for carbon fixation through the Calvin Benson Bassham cycle. Phylogenetic and metabolic analyses reveal the phylum's key role in the carbon cycle, with frequent horizontal gene transfer events influencing its evolutionary trajectory.
Zheng-Han Lian, Nimaichand Salam, Sha Tan, Yang Yuan, Meng-Meng Li, Yu-Xian Li, Ze-Tao Liu, Chao-Jian Hu, Ai-Ping Lv, Yu-Ting OuYang, Cai-Yu Lu, Jing-Yi Zhang, Ying Chen, Le-Bin Chen, Zhen-Hao Luo, Bin Ma, Zheng-Shuang Hua, Jian-Yu Jiao, Wen-Jun Li, Lan Liu
First published: 23 November 2024 doi.org/10.1002/imt2.249
Graphical Abstract
Zhuqueibacterota is a novel bacterial phylum proposed based on hot spring metagenomes and public metagenome-assembled genomes, classified within the Fibrobacterota-Chlorobiota-Bacteroidota superphylum. This globally distributed phylum consists of one class and five orders, with the majority of its members being facultative anaerobes. Notably, the order Zhuqueibacterales utilizes hydrogen as an electron donor for carbon fixation through the Calvin Benson Bassham cycle. Phylogenetic and metabolic analyses reveal the phylum's key role in the carbon cycle, with frequent horizontal gene transfer events influencing its evolutionary trajectory.
Переглядів: 12
Відео
Pep2TCR: Accurate prediction of CD4 T cell receptor binding specificity through transfer learning
Переглядів 5519 годин тому
Pep2TCR: Accurate prediction of CD4 T cell receptor binding specificity through transfer learning and ensemble approach Kaixuan Diao, Tao Wu, Xiangyu Zhao, Nan Wang, Die Qiu, Wei-Liang Wang, Xinxiang Li, Xue-Song Liu First published: 09 November 2024 doi.org/10.1002/imo2.43 Pep2TCR is an advanced deep learning model designed to predict cluster of differentiation 4 (CD4) T cell receptor (TCR) bi...
ramR mutation in enhancing immune activation and elevating eravacycline resistance in Klebsiella
Переглядів 10619 годин тому
Wei Yu, Peiyao Jia, Xiaobing Chu, Shengjie Li, Xinmiao Jia, Ying Zhu, et al. 2024. Dual role of ramR mutation in enhancing immune activation and elevating eravacycline resistance in Klebsiella pneumoniae. iMetaOmics 1: e39. doi.org/10.1002/imo2.39 RESEARCH ARTICLE Open Access Dual role of ramR mutation in enhancing immune activation and elevating eravacycline resistance in Klebsiella pneumoniae...
iMetaOmics | Identification of antimicrobial peptides: A multidisciplinary observation
Переглядів 7619 годин тому
Sizhe Chen, Qi Su. 2024. Insights into the identification of antimicrobial peptides: A multidisciplinary observation. iMetaOmics 1: e41. doi.org/10.1002/imo2.41 Antimicrobial peptides (AMPs) exemplify the principle of “Life finds a way” by adapting to diverse environmental niches. These peptides exhibit remarkable specificity, targeting pathogens unique to their respective habitats. Understandi...
iMetaOmics | Genomic adaptation of Clostridium perfringens to human intestine
Переглядів 4814 днів тому
RESEARCH ARTICLE Open Access Genomic adaptation of Clostridium perfringens to human intestine Ke Wu, Juan Wang, Zelin Yan, Yanyan Zhu, Shaolin Wang, Bo Fu, Chengtao Sun, Ruichao Li, Edward M. Fox, Séamus Fanning, Li Bai, Yang Wang, Yizhi Tang, Zhe Yin, Rong Zhang, Hongning Wang First published: 25 October 2024 doi.org/10.1002/imo2.38 These authors contributed equally: Ke Wu and Juan Wang. Abstr...
iMeta | A comprehensive atlas of endogenous peptides in maize
Переглядів 2114 днів тому
Usman Ali, Lei Tian, Ruihong Tang, et al. 2024. A comprehensive atlas of endogenous peptides in maize. iMeta 3: e247. doi.org/10.1002/imt2.247 In this study, we present a comprehensive peptidomic atlas of 13 maize tissues, covering both vegetative and reproductive phases. Using a three-frame translation of canonical coding sequences, we identified 6100 nonredundant endogenous peptides, signific...
iMeta | MetOrigin 2.0: Advancing the discovery of microbial metabolites and their origins
Переглядів 23614 днів тому
RESEARCH ARTICLE Open Access MetOrigin 2.0: Advancing the discovery of microbial metabolites and their origins Gang Yu, Cuifang Xu, Xiaoyan Wang, Feng Ju, Junfen Fu, Yan Ni First published: 06 November 2024 doi.org/10.1002/imt2.246 Abstract First introduced in 2021, MetOrigin has quickly established itself as a powerful web server to distinguish microbial metabolites and identify the bacteria r...
iMetaOmics | FoodMicroDB: A microbiome database for composition and time-series research in food
Переглядів 41614 днів тому
RESEARCH ARTICLE Open Access FoodMicroDB: A microbiome database for composition and time-series research in food Yahui Li, Hujie Lyu, Haifei Yang, Zhicheng Ju, Chuang Ma, Huiyu Hou, Yao Wang, Yuanping Zhou, Yunyun Gao, Junbo Yang, Shanshan Xu, Defeng Bai, Hao Luo, Salsabeel Yousuf … See all authors First published: 01 November 2024 doi.org/10.1002/imo2.40 These authors contributed equally: Yahu...
Gut microbiota extracellular vesicle in neurodegenerative disorders and therapeutic management
Переглядів 24621 день тому
Adil Hassan, Yin Huang, Mahjabina, et al. 2024. Emerging role of gut microbiota extracellular vesicle in neurodegenerative disorders and insights on their therapeutic management. iMetaOmics 1: e33. doi.org/10.1002/imo2.33 Targeting gut flora to lower sickness risk is a growing scientific subject. The intricate network of microorganisms (gut microbiota) in the human intestines regulates many phy...
iMeta | Bioprospecting of culturable marine biofilm bacteria for novel antimicrobial peptides
Переглядів 23521 день тому
Shen Fan, Peng Qin, Jie Lu, Shuaitao Wang, Jie Zhang, Yan Wang, Aifang Cheng, Yan Cao, Wei Ding, Weipeng Zhang. 2024. Bioprospecting of culturable marine biofilm bacteria for novel antimicrobial peptides. iMeta 3: e244. doi.org/10.1002/imt2.244 Antimicrobial peptides (AMPs) have become a viable source of novel antibiotics that are effective against human pathogenic bacteria. In this study, we c...
iMeta promotion video 2024: first impact factor 23.8
Переглядів 3321 день тому
iMeta: Integrated meta-omics to change the understanding of the biology and environment “iMeta” is a Wiley partner journal launched by iMeta Science Society in 2022, first impact factor 23.8 in 2024, ranking 2/165 in the microbiology field. It aims to publish innovative and high-quality papers with broad and diverse audiences. Its scope is similar to Nature Biotechnology, Nature Methods, Nature...
iMeta | The crop mined phosphorus nutrition via modifying root traits and rhizosphere micro-food web
Переглядів 16221 день тому
RESEARCH ARTICLE Open Access The crop mined phosphorus nutrition via modifying root traits and rhizosphere micro-food web to meet the increased growth demand under elevated CO2 Na Zhou, Xue Han, Ning Hu, Shuo Han, Meng Yuan, Zhongfang Li, Sujuan Wang, Yingchun Li, Hongbo Li, Zed Rengel, Yuji Jiang, Yilai Lou First published: 25 October 2024 doi.org/10.1002/imt2.245 Abstract Elevated CO2 (eCO2) ...
iMetaOmics | Multiomics unravels genotype-microbiome shaping the conjunctival transcriptome
Переглядів 355Місяць тому
RESEARCH ARTICLE Open Access Multiomics integration unravels genotype-microbiome interactions shaping the conjunctival transcriptome Qiaoxing Liang, Guo-Wang Lin, Xiaohu Ding, Bin Zou, Xiaomin Liu, Jing Li, Yuxin Zhang, Xiaofeng Wen, Lingyi Liang, Jin-Xin Bei, Mingguang He, Huijue Jia, Lai Wei First published: 14 October 2024 doi.org/10.1002/imo2.37 Qiaoxing Liang and Guo-Wang Lin contributed e...
iMetaOmics | Harnessing gut microbiota for longevity: mechanisms and genetic manipulation
Переглядів 55Місяць тому
PERSPECTIVE Open Access Harnessing gut microbiota for longevity: Insights into mechanisms and genetic manipulation Peng Shi, Simin Xu, Ziling Yang, Liying Wang, Yalun Wu, Ying Li, Zuobin Zhu First published: 02 October 2024 doi.org/10.1002/imo2.36 Peng Shi and Simin Xu contributed equally. Abstract The gut microbiota is pivotal in maintaining health, with most microorganisms being beneficial, e...
iMetaOmics | Global meta-analysis reveals the drivers of gut microbiome variation across vertebrates
Переглядів 500Місяць тому
RESEARCH ARTICLE Open Access Global meta-analysis reveals the drivers of gut microbiome variation across vertebrates Yong Xie, Songsong Xu, Yufei Xi, Zixin Li, Erwei Zuo, Kai Xing, Lijing Bai, Kui Li First published: 04 October 2024 doi.org/10.1002/imo2.35 Yong Xie and Songsong Xu contributed equally to this study. Abstract Shifts in gut microbial diversity and structure are one route by which ...
iMetaOmics | Altered colonic microenvironment inhibition peripheral serotonin synthesis by LP533401
Переглядів 701Місяць тому
iMetaOmics | Altered colonic microenvironment inhibition peripheral serotonin synthesis by LP533401
iMetaOmics | Genome assembly architecture of a prominent cold-resistant rapeseed germplasm
Переглядів 177Місяць тому
iMetaOmics | Genome assembly architecture of a prominent cold-resistant rapeseed germplasm
iMeta | Novel microbial modifications of bile acids and their functional implications
Переглядів 808Місяць тому
iMeta | Novel microbial modifications of bile acids and their functional implications
The rheumatoid arthritis gut microbial biobank reveals core microbial species
Переглядів 185Місяць тому
The rheumatoid arthritis gut microbial biobank reveals core microbial species
iMeta | Interaction between intestinal mycobiota and microbiota shapes lung inflammation
Переглядів 277Місяць тому
iMeta | Interaction between intestinal mycobiota and microbiota shapes lung inflammation
iMeta | ImageGP 2 for enhanced data visualization and reproducible analysis in biomedical research
Переглядів 198Місяць тому
iMeta | ImageGP 2 for enhanced data visualization and reproducible analysis in biomedical research
iMeta | Akkermansia muciniphila ameliorates streptozotocin-induced hyperglycemia and muscle atrophy
Переглядів 263Місяць тому
iMeta | Akkermansia muciniphila ameliorates streptozotocin-induced hyperglycemia and muscle atrophy
iMeta | iNAP 2.0: Harnessing metabolic complementarity in microbial network analysis
Переглядів 314Місяць тому
iMeta | iNAP 2.0: Harnessing metabolic complementarity in microbial network analysis
Wiley Journal iMeta Introduction First Impact Factor 23.7
Переглядів 149Місяць тому
Wiley Journal iMeta Introduction First Impact Factor 23.7
Multi-level insights into the immuno-oncology-microbiome axis: From biotechnology to novel therapies
Переглядів 7042 місяці тому
Multi-level insights into the immuno-oncology-microbiome axis: From biotechnology to novel therapies
iMetaOmics | OUTPOST: software for metagenome shotgun sequencing incorporating group stratification
Переглядів 742 місяці тому
iMetaOmics | OUTPOST: software for metagenome shotgun sequencing incorporating group stratification
iMetaOmics | Microbiome meets One Health leading well-being and social sustainability
Переглядів 552 місяці тому
iMetaOmics | Microbiome meets One Health leading well-being and social sustainability
iMeta Immunopathogenesis and biomarkers between open-angle glaucoma and systemic lupus erythematosus
Переглядів 1892 місяці тому
iMeta Immunopathogenesis and biomarkers between open-angle glaucoma and systemic lupus erythematosus
iMeta | USEARCH 12: Open-source software for sequencing analysis in bioinformatics and microbiome
Переглядів 2812 місяці тому
iMeta | USEARCH 12: Open-source software for sequencing analysis in bioinformatics and microbiome
iMetaOmics | Arabidopsis multiomics reveals the role of autophagy in root microbiome assembly
Переглядів 7892 місяці тому
iMetaOmics | Arabidopsis multiomics reveals the role of autophagy in root microbiome assembly