UW Information Technology
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HYAK: R and Rstudio
Recorded training delivered on Zoom on 28 August 2024.
Presenter: Dr. Kristen Finch; HPC Staff Scientist; Hyak Team
IMPORTANT: this is NOT an R and Rstudio how-to, this tutorial is how to use R and Rstudio containers on Hyak.
"HYAK: Containers are your Friend" tutorial video is a recommended pre-requisite for this video: ua-cam.com/video/zPsvUQV_GV0/v-deo.html
This video covers:
- What is a container and why use them?
- Why use R and Rstudio containers? (Rocker Project)
- SSH port forwarding to Rstudio server
- Custom R and Rstudio containers
- Rscript function
- submitting Rscripts with SLURM for long running jobs
We have a written walk through tutorial that covers most of this video content: hyak.uw.edu/docs/tools/r
Websites cited during this video:
R and Rstudio containers: hub.docker.com/u/rocker
Rocker Project: rocker-project.org/
The SLURM submission script that we use in this tutorial was adapted from rocker-project.org/use/singularity.html#slurm-job-script
Переглядів: 48

Відео

HYAK: "Containers are your friend"
Переглядів 11828 днів тому
Recorded training delivered on Zoom on 21 August 2024. Presenter: Dr. Kristen Finch; HPC Staff Scientist; Hyak Team This video covers: - Hyak software usage policies - What is a container and why use them? - Container repositories - Apptainer shell - Custom containers - Building from local image Websites cited in the video include: Apptainer documentation: apptainer.org/docs/user/main/index.htm...
HYAK: SLURM and Advanced SLURM
Переглядів 140Місяць тому
Recorded training delivered on Zoom on 14 August 2024. Presenter: Dr. Kristen Finch; HPC Staff Scientist; Hyak Team This video covers: - Hyak’s job scheduler SLURM - Accounts and partitions on Hyak - Interactive jobs - Batch jobs - Array jobs - Using bash scripting to level up your SLURM usage Websites cited in the video include: - SLURM official documentation: slurm.schedmd.com/documentation.h...
HYAK Basics: Linux Command Line Interface
Переглядів 102Місяць тому
Recorded training delivered on Zoom on 7 August 2024. Presenter: Dr. Kristen Finch; HPC Staff Scientist; Hyak Team This video covers: - Signing into Hyak - How Hyak works - Navigating the filesystem with Linux Command Line Interface - Home directories and storage on Hyak - Basic Linux Commands I & II This training also exists as a walk-through tutorial publicly available online: hyak.uw.edu/doc...
Off-site Work Location Ideas
Переглядів 66Місяць тому
Off-site Work Location Ideas
Cardiovascular Disease and UW's Supercomputer
Переглядів 407Місяць тому
Special thanks to: Patrick M Boyle, PhD, PEng, FHRS, FAHA and his team at the Cardiac Systems Simulation (CardSS) Laboratory - cardsslab.org Nam Pho and the Hyak team The many complex open-source packages maintained by the openCARP community (opencarp.org/) as well as powerful new tools created by numericor (numericor.at/)
QLoRA: Efficient Finetuning of Quantized LLMs
Переглядів 1,3 тис.8 місяців тому
Learn how Research Computing supports Tim Dettmers, a Ph.D. student, create ground breaking advancements in the world of quantization, fine-tuning, and large language models. QLoRA Authors: Tim Dettmers, Artidoro Pagnoni, Ari Holtzman, Luke Zettlemoyer Special thanks to the Nam Pho and the Hyak team for enabling this research
Transferring and Moving Finance Cases
Переглядів 569 місяців тому
How to transfer a case to another organization, move it to another assignment group, and move it to a central unit via topic routing.
Dashboard Navigation
Переглядів 589 місяців тому
How to find, load, and change the dashboard you are viewing in UW Connect.
Filtering in UW Connect
Переглядів 289 місяців тому
How to find, edit, and create filters in UW Connect.
UW-IT Thank You Video
Переглядів 4069 місяців тому
Thank you UW-IT for a wonderful year!
National Cybersecurity Awareness Month / Data Destruction Day
Переглядів 9810 місяців тому
Find out more at: ciso.uw.edu
Introduction to Knowledge Navigator
Переглядів 7111 місяців тому
An overview of Knowledge Navigator, a tool to help understand UW data.
The Power of Research Computing: Leveraging Technology at UW Tacoma
Переглядів 30211 місяців тому
Learn how Research Computing supports a new platform making it easier for biologists, clinicians and students to run analytical workflows for precision medicine, cancer diagnosis, vaccine design and more. Special thanks to: Dr. Ka Yee Yeung Ling-Hong Hung www.biodepot.io Rob Fatland UW Director of Cloud and Data Solutions
UW-IT's 2023 Summer BBQ, Town Hall, and Scavenger Hunt
Переглядів 33511 місяців тому
A recap of UW-IT’s Summer Event from Sept. 12, 2023. UW-IT staff who were able to join enjoyed a campus scavenger hunt, inspiring Town Hall and BBQ. Finally, we were in-person again!
Attention UW Connect Agents: Reference Numbers are Coming Soon!
Переглядів 131Рік тому
Attention UW Connect Agents: Reference Numbers are Coming Soon!
UW Connect
Переглядів 98Рік тому
UW Connect
Transitioning from HRPWS v2 to v3
Переглядів 87Рік тому
Transitioning from HRPWS v2 to v3
Transitioning HR Data from ODS to UWODS
Переглядів 90Рік тому
Transitioning HR Data from ODS to UWODS
UW Profiles Overview
Переглядів 2993 роки тому
UW Profiles Overview
UW Connect Lite for Ticketing
Переглядів 5074 роки тому
UW Connect Lite for Ticketing
EDW Security Overview
Переглядів 5174 роки тому
EDW Security Overview
BI Portal Introduction Tutorial
Переглядів 1,3 тис.4 роки тому
BI Portal Introduction Tutorial
Knowledge Navigator Introduction
Переглядів 4754 роки тому
Knowledge Navigator Introduction
Project RACI Matrix
Переглядів 1,2 тис.5 років тому
Project RACI Matrix
Student Web Service Metadata in Knowledge Navigator
Переглядів 1795 років тому
Student Web Service Metadata in Knowledge Navigator
Top Tech Tips for UW Students (Audio Described)
Переглядів 345 років тому
Top Tech Tips for UW Students (Audio Described)
Top Tech Tips for UW Students
Переглядів 4565 років тому
Top Tech Tips for UW Students
Add & Remove Calendar Editors in Trumba
Переглядів 2685 років тому
Add & Remove Calendar Editors in Trumba
UW OneDrive for Business Shared Files (captioned)
Переглядів 6785 років тому
UW OneDrive for Business Shared Files (captioned)

КОМЕНТАРІ

  • @CtrlIQ
    @CtrlIQ 27 днів тому

    This is so informative. Great presentation, Dr. Finch!

  • @taifaharris4936
    @taifaharris4936 Місяць тому

    Love this video! I plan to try a few this summer. Thank you!

  • @alonsoquesada1136
    @alonsoquesada1136 4 місяці тому

    120hr meeting on line 9 does not look correct, I think is adding the time the meeting starts on one day until it finishes some other day

  • @redfield126
    @redfield126 6 місяців тому

    Totally fan of your achievements. QLORA helps me so so much to experiment by myself and learn learn learn beyond expectation. You are great !

    • @uwinfotech
      @uwinfotech 2 місяці тому

      Awesome, Tim's great!

  • @420_gunna
    @420_gunna 8 місяців тому

    Tim's the goat and I didn't know his hair was nice like that

    • @udubsam
      @udubsam 8 місяців тому

      Tim's def the goat

  • @rajeshj1075
    @rajeshj1075 9 місяців тому

    nice explanation. Thanks. I am going to use it during sprint planning to check my actual capacity

  • @zeinebchem4011
    @zeinebchem4011 Рік тому

    Thanks a LOT ! I am preparing my asesment

  • @karencheng667
    @karencheng667 Рік тому

    I don't think Mary Gates Hall still has that Media Studio? Is that now gone?

    • @uwinfotech
      @uwinfotech Рік тому

      Thank you, we've updated the video to remove the reference to the Media Studio.

  • @dianekmk
    @dianekmk 2 роки тому

    This is fantastic! I'm using it to help track and report time. Wondering how to use the formula when recurring meetings are involved. Is there a way to get the export to only show the occurrences that happened in a single week?

  • @ilikedabeans9971
    @ilikedabeans9971 2 роки тому

    This school is afraid of words

  • @luciepustelnikova5062
    @luciepustelnikova5062 2 роки тому

    I finally found what I looked for the whole evening 😍🙈🤦‍♀️😱💪. Thank you soooo muuuch! 🙋‍♀️

  • @mrupperscore
    @mrupperscore 3 роки тому

    This is an excellent session. You had been very simple and explained it so well that anyone with an excel knowledge could follow. Thank you. I was looking for this info for a long long time

  • @murchman0
    @murchman0 3 роки тому

    Just want to say thanks for this, it helped me show just how much time we were spending meetings for a specific project

  • @TriColoredTiger
    @TriColoredTiger 3 роки тому

    You're a God send.

  • @olytitanbos1
    @olytitanbos1 3 роки тому

    Hey quick question; what tool was used to build this portal? Looking to build something similar.

  • @optimum408
    @optimum408 4 роки тому

    this is great thanks a million.

  • @dennisonyango2084
    @dennisonyango2084 5 років тому

    Many thanks!

  • @rimotivri
    @rimotivri 6 років тому

    underwater stuff are welcome. Cool.

  • @rimotivri
    @rimotivri 6 років тому

    underwater things kick ass. Cool.

  • @rimotivri
    @rimotivri 6 років тому

    freediving stuff are awsome. Cool.

  • @oldhead7768
    @oldhead7768 6 років тому

    Can anyone create a Kerboros User ID and Password? I enter a user ID and password and the "enter user ID and Password" dialogue box just keeps popping up. I am using the email method.

  • @tanyasnover7790
    @tanyasnover7790 7 років тому

    This doesn't account for re-occuring meetings. How can you get the time for those?

  • @igorflato4037
    @igorflato4037 7 років тому

    I'm curious if it is possible to import data from Seller-Central (Amazon.com) Into Excel 2016 for Mac. I'm a seller on Amazon and looking for a way how to connect to their website "Seller Central" to get data of my sales.

    • @tjacks282
      @tjacks282 7 років тому

      Sounds like a question for Amazon's Seller-Central team.

  • @mrasianpeanutman
    @mrasianpeanutman 10 років тому

    I'm gonna add this to my "favorites" playlist so I can watch it all the time

  • @mrasianpeanutman
    @mrasianpeanutman 10 років тому

    This video is so awesome